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The map label for this gene is ymdB [C]

Identifier: 78067650

GI number: 78067650

Start: 3329459

End: 3329983

Strand: Reverse

Name: ymdB [C]

Synonym: Bcep18194_A6181

Alternate gene names: 78067650

Gene position: 3329983-3329459 (Counterclockwise)

Preceding gene: 78067651

Following gene: 78067647

Centisome position: 90.14

GC content: 69.9

Gene sequence:

>525_bases
ATGCTGCAGATCCATTCCACCACGCTCGATGCGCAGGTCGTCGACATCACGACGCTCGATGTCGATGCGATCGTCAACGC
CGCGAACGGCTCGCTGCTCGGCGGGGGCGGCGTCGACGGCGCGATCCATCGCGCGGCCGGCCCCGGCCTGCTTGCCGAAT
GCCGCACGCTCGGCGGCTGCGAGACAGGCGACGCCAAGCTCACGCGCGGCCACGGGCTGCCGGCGCGCTACGTGATCCAT
GCGGTCGGGCCGGTGTGGCACGGCGGCGGGAGCGGCGAGGCCGACCTGCTCGCGTCGTGCTACCGGCGCGCGATCGAGCT
GGCCGAAGAGGTCGCGGCGACATCGATCGCGTTCCCGGCGATCAGTTGCGGCATCTATCGCTATCCGGCTGAAGAGGCCG
TGGAGATCGCGGTGGGCACCGTCGCCGAAATGCTGCCGCAGGCGCCGAACCTCGCACGCGTGGTGTTCGCGTGCTTTTCT
CCCGACATCTACGACCTGTATCGCGCATGGCTCGCGCGGACGTGA

Upstream 100 bases:

>100_bases
CGAGTAGGGCGCCGGCGCCGCCTGGCGCCGTGTTCGCGTCGGGCGCGCGGCGTCAAAGCGCGCTACGCTTGAACAGTCTC
CGGCGTTCCGGGAGGTTGTC

Downstream 100 bases:

>100_bases
CGCGTCACGCGGTGCGGGATGCGCCGCGCAAGCGTCATGCGCCGCCTTCGAAGCCGGCCTGGCGCCACGCTTCGAACACG
ACCACCGCGACCGTGTTCGA

Product: Appr-1-p processing enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MLQIHSTTLDAQVVDITTLDVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGCETGDAKLTRGHGLPARYVIH
AVGPVWHGGGSGEADLLASCYRRAIELAEEVAATSIAFPAISCGIYRYPAEEAVEIAVGTVAEMLPQAPNLARVVFACFS
PDIYDLYRAWLART

Sequences:

>Translated_174_residues
MLQIHSTTLDAQVVDITTLDVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGCETGDAKLTRGHGLPARYVIH
AVGPVWHGGGSGEADLLASCYRRAIELAEEVAATSIAFPAISCGIYRYPAEEAVEIAVGTVAEMLPQAPNLARVVFACFS
PDIYDLYRAWLART
>Mature_174_residues
MLQIHSTTLDAQVVDITTLDVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGCETGDAKLTRGHGLPARYVIH
AVGPVWHGGGSGEADLLASCYRRAIELAEEVAATSIAFPAISCGIYRYPAEEAVEIAVGTVAEMLPQAPNLARVVFACFS
PDIYDLYRAWLART

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=160, Percent_Identity=53.75, Blast_Score=164, Evalue=3e-41,
Organism=Homo sapiens, GI13569840, Length=159, Percent_Identity=53.4591194968553, Blast_Score=156, Evalue=7e-39,
Organism=Homo sapiens, GI207450721, Length=145, Percent_Identity=40, Blast_Score=104, Evalue=4e-23,
Organism=Homo sapiens, GI8923143, Length=145, Percent_Identity=40, Blast_Score=104, Evalue=4e-23,
Organism=Homo sapiens, GI154813199, Length=143, Percent_Identity=39.1608391608392, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI20336746, Length=170, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI93141018, Length=171, Percent_Identity=24.5614035087719, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI93141020, Length=171, Percent_Identity=24.5614035087719, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI4758496, Length=171, Percent_Identity=24.5614035087719, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI226371718, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=6e-12,
Organism=Homo sapiens, GI226371716, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=6e-12,
Organism=Homo sapiens, GI226371714, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=6e-12,
Organism=Homo sapiens, GI226371712, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=6e-12,
Organism=Homo sapiens, GI226371710, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=6e-12,
Organism=Homo sapiens, GI226371706, Length=154, Percent_Identity=31.1688311688312, Blast_Score=67, Evalue=6e-12,
Organism=Escherichia coli, GI1787283, Length=163, Percent_Identity=49.6932515337423, Blast_Score=147, Evalue=3e-37,
Organism=Caenorhabditis elegans, GI17538214, Length=148, Percent_Identity=45.2702702702703, Blast_Score=120, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24586353, Length=146, Percent_Identity=35.6164383561644, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18104; Mature: 18104

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQIHSTTLDAQVVDITTLDVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGC
CEEECCCCCCEEEEEEEEECHHHHHCCCCCCEECCCCCCCHHHHCCCCCHHHHHHHCCCC
ETGDAKLTRGHGLPARYVIHAVGPVWHGGGSGEADLLASCYRRAIELAEEVAATSIAFPA
CCCCCEEECCCCCCHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISCGIYRYPAEEAVEIAVGTVAEMLPQAPNLARVVFACFSPDIYDLYRAWLART
HHCCEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MLQIHSTTLDAQVVDITTLDVDAIVNAANGSLLGGGGVDGAIHRAAGPGLLAECRTLGGC
CEEECCCCCCEEEEEEEEECHHHHHCCCCCCEECCCCCCCHHHHCCCCCHHHHHHHCCCC
ETGDAKLTRGHGLPARYVIHAVGPVWHGGGSGEADLLASCYRRAIELAEEVAATSIAFPA
CCCCCEEECCCCCCHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISCGIYRYPAEEAVEIAVGTVAEMLPQAPNLARVVFACFSPDIYDLYRAWLART
HHCCEEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]