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The map label for this gene is kdsD [H]

Identifier: 78067585

GI number: 78067585

Start: 3261256

End: 3262239

Strand: Direct

Name: kdsD [H]

Synonym: Bcep18194_A6116

Alternate gene names: 78067585

Gene position: 3261256-3262239 (Clockwise)

Preceding gene: 78067579

Following gene: 78067586

Centisome position: 88.28

GC content: 69.61

Gene sequence:

>984_bases
ATGATAGCGAAAATCAATGATGACCGGGCGCTCGCGCTCGCCCGCGACGTGCTCGACATCGAGGCGGACGCCGTGCGCGC
ACTGCGCGACCAGCTCGACGGCGGCTTCGTCCAGGCCGTCGCGCTGCTGCTCGGCTGTCGCGGCCGCGTGGTGGTGTCCG
GTATCGGCAAATCGGGGCATATCGCCCGCAAGATCGCGGCCACGCTGGCCAGCACCGGCACGCCGGCCTTCTTCGTCCAC
CCTGCCGAGGCCAGCCACGGCGACCTCGGGATGGTCACCTCCGACGACGTCTTCATCGGCATTTCCTATTCCGGCGAATC
CGAAGAACTCGTGGCGATCCTGCCGCTCGTGAAGCGGATCGGCGCGAAGCTGATCGCGATCACGGGCCGCGCGGAATCGA
GCCTCGGCACGCTCGCCGACGTGAACCTGAACGCCGCGGTCTCGAAAGAGGCCTGCCCGATGAACCTCGCGCCCACGGCG
AGCACGACCGCCGCGCTCGCGCTCGGCGACGCGCTCGCCGTGGCGGTGCTCGACGCGCGCGGCTTCGGCTCGGAAGATTT
CGCGCGCTCGCACCCGGGCGGCGCACTCGGCCGGCGCCTGCTCACCTACGTGCGCGACGTGATGCGCTCGGGCGACGACG
TCCCGTCCGTCGGGCTCGACGCGACGCTGTCGGACGCGCTGTTCCAGATCACCGCGAAGCGCCTCGGCATGACGGCCGTG
GTCGACGCCGACGGCAAGGTCGCGGGCATCTTCACCGATGGCGACCTGCGCCGCGTGCTCGCGCGCGACGGCGACTTCCG
CACGCTGCCGATCACCGACGTGATGACGCGCGGCCCGCGCACGGTTGCACCGGATCACCTGGCGGTCGAGGCCGTGGAAC
TGATGGAGCGCCACCGGATCAACCAGATGCTGGTGGTCGATGCCGACGGCGTGCTGATCGGCGCGCTGAACATGCACGAC
CTGTTTTCGAAGAAGGTGATCTGA

Upstream 100 bases:

>100_bases
GCCACGGCAATGCGGGCGCGGGTGGTGGCGGTGGTCGGGCGACCTCGGACGAGTCCGAAGGCCCGGCGCGGCGAACAAAC
GCCTTTGCTATACTCCGCGC

Downstream 100 bases:

>100_bases
TGAGCGCAGCGCTGACTGCGGCCGAGCGCGCGAGCCGCGTGAAGCTGATGATTTTCGACGTCGACGGCGTGCTGACCGAC
GGCGGCCTGCTGTTTACCGC

Product: KpsF/GutQ family sugar isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MIAKINDDRALALARDVLDIEADAVRALRDQLDGGFVQAVALLLGCRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVH
PAEASHGDLGMVTSDDVFIGISYSGESEELVAILPLVKRIGAKLIAITGRAESSLGTLADVNLNAAVSKEACPMNLAPTA
STTAALALGDALAVAVLDARGFGSEDFARSHPGGALGRRLLTYVRDVMRSGDDVPSVGLDATLSDALFQITAKRLGMTAV
VDADGKVAGIFTDGDLRRVLARDGDFRTLPITDVMTRGPRTVAPDHLAVEAVELMERHRINQMLVVDADGVLIGALNMHD
LFSKKVI

Sequences:

>Translated_327_residues
MIAKINDDRALALARDVLDIEADAVRALRDQLDGGFVQAVALLLGCRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVH
PAEASHGDLGMVTSDDVFIGISYSGESEELVAILPLVKRIGAKLIAITGRAESSLGTLADVNLNAAVSKEACPMNLAPTA
STTAALALGDALAVAVLDARGFGSEDFARSHPGGALGRRLLTYVRDVMRSGDDVPSVGLDATLSDALFQITAKRLGMTAV
VDADGKVAGIFTDGDLRRVLARDGDFRTLPITDVMTRGPRTVAPDHLAVEAVELMERHRINQMLVVDADGVLIGALNMHD
LFSKKVI
>Mature_327_residues
MIAKINDDRALALARDVLDIEADAVRALRDQLDGGFVQAVALLLGCRGRVVVSGIGKSGHIARKIAATLASTGTPAFFVH
PAEASHGDLGMVTSDDVFIGISYSGESEELVAILPLVKRIGAKLIAITGRAESSLGTLADVNLNAAVSKEACPMNLAPTA
STTAALALGDALAVAVLDARGFGSEDFARSHPGGALGRRLLTYVRDVMRSGDDVPSVGLDATLSDALFQITAKRLGMTAV
VDADGKVAGIFTDGDLRRVLARDGDFRTLPITDVMTRGPRTVAPDHLAVEAVELMERHRINQMLVVDADGVLIGALNMHD
LFSKKVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=313, Percent_Identity=55.591054313099, Blast_Score=338, Evalue=3e-94,
Organism=Escherichia coli, GI87082151, Length=313, Percent_Identity=50.4792332268371, Blast_Score=301, Evalue=4e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34241; Mature: 34241

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKINDDRALALARDVLDIEADAVRALRDQLDGGFVQAVALLLGCRGRVVVSGIGKSGH
CCEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCH
IARKIAATLASTGTPAFFVHPAEASHGDLGMVTSDDVFIGISYSGESEELVAILPLVKRI
HHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEECCCEEEEEEECCCCCHHHHHHHHHHHC
GAKLIAITGRAESSLGTLADVNLNAAVSKEACPMNLAPTASTTAALALGDALAVAVLDAR
CCEEEEEECCCCCCCCCEEECCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECC
GFGSEDFARSHPGGALGRRLLTYVRDVMRSGDDVPSVGLDATLSDALFQITAKRLGMTAV
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE
VDADGKVAGIFTDGDLRRVLARDGDFRTLPITDVMTRGPRTVAPDHLAVEAVELMERHRI
EECCCCEEEEEECHHHHHHHHCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
NQMLVVDADGVLIGALNMHDLFSKKVI
CEEEEEECCCEEEEECCHHHHHHHCCC
>Mature Secondary Structure
MIAKINDDRALALARDVLDIEADAVRALRDQLDGGFVQAVALLLGCRGRVVVSGIGKSGH
CCEEECCCHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCH
IARKIAATLASTGTPAFFVHPAEASHGDLGMVTSDDVFIGISYSGESEELVAILPLVKRI
HHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEECCCEEEEEEECCCCCHHHHHHHHHHHC
GAKLIAITGRAESSLGTLADVNLNAAVSKEACPMNLAPTASTTAALALGDALAVAVLDAR
CCEEEEEECCCCCCCCCEEECCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHEEEEEECC
GFGSEDFARSHPGGALGRRLLTYVRDVMRSGDDVPSVGLDATLSDALFQITAKRLGMTAV
CCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEE
VDADGKVAGIFTDGDLRRVLARDGDFRTLPITDVMTRGPRTVAPDHLAVEAVELMERHRI
EECCCCEEEEEECHHHHHHHHCCCCEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
NQMLVVDADGVLIGALNMHDLFSKKVI
CEEEEEECCCEEEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]