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The map label for this gene is yddQ [H]

Identifier: 78067411

GI number: 78067411

Start: 3070783

End: 3071529

Strand: Reverse

Name: yddQ [H]

Synonym: Bcep18194_A5942

Alternate gene names: 78067411

Gene position: 3071529-3070783 (Counterclockwise)

Preceding gene: 78067413

Following gene: 78067409

Centisome position: 83.15

GC content: 70.95

Gene sequence:

>747_bases
ATGCATCGCATCGCGCCGCTGGCCGTCCCGTTCCGGGGCGGGGCCGCGCCCCCGGACCAGGAGCCCGCCATGTCGAACGC
CGTCCCGCAATCCGCTTCCCAAACCGTTTCCCGCCCGGCGGCCCGCCGCGCGCTGATCGTGATCGACGTCCAGAACGAAT
ACGTGACGGGCAACCTGCCGATCGAGTATCCGCCGCTCGACGTGTCGCTCGCGAACATCGGCCGCGCGATCGATGCCGCG
CATGCGGCCGGCGTGCCGGTGATCGTCGTCCAGCACGTCGCGCCGGCCGGCGCACCGATTTTCGCGCCCGGCTCCGACGG
CGTCGCGCTGCACGCGGTCGTTGCCGGCCGGCCATACGCGCACCTGATCGAGAAGAAGCAGGCGAGCTCGTTTGCCGGGA
CCGACCTCGCCGCATGGCTCGACGCGCACGGGATCGGCACGCTCGCGGTGGCCGGCTACATGACGCACAACTGCAATGCG
TCGACGGTCTATCACGCGGCGCACGCGGGGCTGAATGTCGAGTACCTGGACGACGCGACGGGTGCGCTGCCGTACGAGAA
CGAAGCAGGCTCGGCGAGCGCCGAGGAGATTCACCGTGCGTACACGGTGGTGTTCCAGTCGAATTTCGCGGCCGTGATGT
CGACCGACGCGTGGATCGCGGGGCTGGCCGGGGCGCCGATGCCGAAGCGCGATTCGGTCGCCGCGTCGAACCAGCGGGCC
CGCGCGCAGCGCGCGAAGGCGGCCTGA

Upstream 100 bases:

>100_bases
GAGGCGGCGGCGGTCATGGCGGGCTCCGGAATGGCGATGGCCCGATTCTATCGAAGAATGGCTATCGGGCCACTGTCCCG
GTGAACGATGCGCACCGACA

Downstream 100 bases:

>100_bases
AACAGCGGGGAGACGGGAGAGGGGGCGGGCAGTGCGTTTGCGAGGTTGGCGCGCCGCTCGATGAAACGGCAACCGCAGGC
GGGCGCGCGTCGCGCGGTCA

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MHRIAPLAVPFRGGAAPPDQEPAMSNAVPQSASQTVSRPAARRALIVIDVQNEYVTGNLPIEYPPLDVSLANIGRAIDAA
HAAGVPVIVVQHVAPAGAPIFAPGSDGVALHAVVAGRPYAHLIEKKQASSFAGTDLAAWLDAHGIGTLAVAGYMTHNCNA
STVYHAAHAGLNVEYLDDATGALPYENEAGSASAEEIHRAYTVVFQSNFAAVMSTDAWIAGLAGAPMPKRDSVAASNQRA
RAQRAKAA

Sequences:

>Translated_248_residues
MHRIAPLAVPFRGGAAPPDQEPAMSNAVPQSASQTVSRPAARRALIVIDVQNEYVTGNLPIEYPPLDVSLANIGRAIDAA
HAAGVPVIVVQHVAPAGAPIFAPGSDGVALHAVVAGRPYAHLIEKKQASSFAGTDLAAWLDAHGIGTLAVAGYMTHNCNA
STVYHAAHAGLNVEYLDDATGALPYENEAGSASAEEIHRAYTVVFQSNFAAVMSTDAWIAGLAGAPMPKRDSVAASNQRA
RAQRAKAA
>Mature_248_residues
MHRIAPLAVPFRGGAAPPDQEPAMSNAVPQSASQTVSRPAARRALIVIDVQNEYVTGNLPIEYPPLDVSLANIGRAIDAA
HAAGVPVIVVQHVAPAGAPIFAPGSDGVALHAVVAGRPYAHLIEKKQASSFAGTDLAAWLDAHGIGTLAVAGYMTHNCNA
STVYHAAHAGLNVEYLDDATGALPYENEAGSASAEEIHRAYTVVFQSNFAAVMSTDAWIAGLAGAPMPKRDSVAASNQRA
RAQRAKAA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 25624; Mature: 25624

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRIAPLAVPFRGGAAPPDQEPAMSNAVPQSASQTVSRPAARRALIVIDVQNEYVTGNLP
CCCCCCEEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCEEEEEEEECCCEEECCCC
IEYPPLDVSLANIGRAIDAAHAAGVPVIVVQHVAPAGAPIFAPGSDGVALHAVVAGRPYA
EECCCCCEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCCCCEEEEEEECCCCHH
HLIEKKQASSFAGTDLAAWLDAHGIGTLAVAGYMTHNCNASTVYHAAHAGLNVEYLDDAT
HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEHHHCCCCEEEECCCC
GALPYENEAGSASAEEIHRAYTVVFQSNFAAVMSTDAWIAGLAGAPMPKRDSVAASNQRA
CCCCCCCCCCCCCHHHHHHHEEEEEECCCEEEEECCHHHHHCCCCCCCCCCCCCCCCHHH
RAQRAKAA
HHHHHCCC
>Mature Secondary Structure
MHRIAPLAVPFRGGAAPPDQEPAMSNAVPQSASQTVSRPAARRALIVIDVQNEYVTGNLP
CCCCCCEEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCEEEEEEEECCCEEECCCC
IEYPPLDVSLANIGRAIDAAHAAGVPVIVVQHVAPAGAPIFAPGSDGVALHAVVAGRPYA
EECCCCCEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCCCCEEEEEEECCCCHH
HLIEKKQASSFAGTDLAAWLDAHGIGTLAVAGYMTHNCNASTVYHAAHAGLNVEYLDDAT
HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEHHHCCCCEEEECCCC
GALPYENEAGSASAEEIHRAYTVVFQSNFAAVMSTDAWIAGLAGAPMPKRDSVAASNQRA
CCCCCCCCCCCCCHHHHHHHEEEEEECCCEEEEECCHHHHHCCCCCCCCCCCCCCCCHHH
RAQRAKAA
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]