Click here to switch to the map view.

The map label for this gene is yafC [H]

Identifier: 78067390

GI number: 78067390

Start: 3044871

End: 3045755

Strand: Direct

Name: yafC [H]

Synonym: Bcep18194_A5921

Alternate gene names: 78067390

Gene position: 3044871-3045755 (Clockwise)

Preceding gene: 78067387

Following gene: 78067399

Centisome position: 82.42

GC content: 70.28

Gene sequence:

>885_bases
ATGGAAAACCTCGGCGGCTTCGTCGTGTTCGTTCAGGTCGCGGAAACGCGCAGTTTCGTCGCGGCCGGGCGCGCGCTCGG
GCTGTCGGCATCGGCGATCGGCAAGCGCATCGCGCGGCTGGAGGCACGCCTGAACGTGCGGCTCTTTCACCGCAGCACGC
GCAGCATCACGCTGACGGCCGAAGGCACGCGCTTTCTCGAACGGTGCCGGCGCGTGCTCGCCGAGCTCGACGCGGCCGAG
CAGGAACTGACGCACAGCGCCGAAGCGCCGCGCGGGCGCCTGCGCGTGAGCCTGCCGACGATCGGCACGCTGCTGCTGCC
GGTGCTCGCCGATTTCATGGCCGCGTATCCGGAGATCGAGCTCGACATCGATTTCAGCGACCGGCTCGTCGACGTCGTCG
ACGAAGGCTTCGACGCGGTGCTACGCACCGGCCAGCCGTCGGATTCGCGGCTGTCGTCGCGGCTGCTCGGCCACTTCCGC
CAGCACCTCGTCGCGTCGCCCGACTATCTCGACCGGCACGGTACGCCGCGCACGCCGGCCGATCTCACGCAGCACCGCTG
CCTGCACTACCGTTTCCCGACCAGCGGCAAGCTCGAAACCTGGCCGCTGCGCGTACCGCGCGCGGGCACGCTGCCCGAGG
TGCCGGTCGCGATGGTCAGCAACAGCGCGGAAGCGCGCTTGTGCTTCGCGCTGCGCGGGCTCGGCATCGCGTGCCTGCCC
ATCTTCTTCGTGCGCGACGCGCTCGAAGACGGCACGCTGCGCGCGGTGCTCGACGAGCACATCGCGAGCTGCACGCCGAT
CTACGTGCTGTGGCCGTCAGGGCGCCACCCGACGCCGAAGCTGCGCGCGTTCGTCGATTACATGGCCGCGCACCTGCCGG
TGTGA

Upstream 100 bases:

>100_bases
ACAGTGAACGAGCGCTCATCGTAGGGAGCCGACGCAAGAAGAAAAACCCGGGTAGAGTTCCGGACAATCCGGACGCCGGC
GTCCGCAATCGGAAACTCGC

Downstream 100 bases:

>100_bases
GCGCGGCCGGCCGTCATGCGGCCTTCGCGTGCACGCTCAGCCGGCGGAACGCCTGCCCGTGCTCGTCGAACAGGTGGCAA
TGCTCGGCTTCCGCGTGCAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MENLGGFVVFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLERCRRVLAELDAAE
QELTHSAEAPRGRLRVSLPTIGTLLLPVLADFMAAYPEIELDIDFSDRLVDVVDEGFDAVLRTGQPSDSRLSSRLLGHFR
QHLVASPDYLDRHGTPRTPADLTQHRCLHYRFPTSGKLETWPLRVPRAGTLPEVPVAMVSNSAEARLCFALRGLGIACLP
IFFVRDALEDGTLRAVLDEHIASCTPIYVLWPSGRHPTPKLRAFVDYMAAHLPV

Sequences:

>Translated_294_residues
MENLGGFVVFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLERCRRVLAELDAAE
QELTHSAEAPRGRLRVSLPTIGTLLLPVLADFMAAYPEIELDIDFSDRLVDVVDEGFDAVLRTGQPSDSRLSSRLLGHFR
QHLVASPDYLDRHGTPRTPADLTQHRCLHYRFPTSGKLETWPLRVPRAGTLPEVPVAMVSNSAEARLCFALRGLGIACLP
IFFVRDALEDGTLRAVLDEHIASCTPIYVLWPSGRHPTPKLRAFVDYMAAHLPV
>Mature_294_residues
MENLGGFVVFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTAEGTRFLERCRRVLAELDAAE
QELTHSAEAPRGRLRVSLPTIGTLLLPVLADFMAAYPEIELDIDFSDRLVDVVDEGFDAVLRTGQPSDSRLSSRLLGHFR
QHLVASPDYLDRHGTPRTPADLTQHRCLHYRFPTSGKLETWPLRVPRAGTLPEVPVAMVSNSAEARLCFALRGLGIACLP
IFFVRDALEDGTLRAVLDEHIASCTPIYVLWPSGRHPTPKLRAFVDYMAAHLPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=34.6020761245675, Blast_Score=184, Evalue=4e-48,
Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=34.3642611683849, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=32.7702702702703, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=29.8305084745763, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=31.5068493150685, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=32.996632996633, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=29.757785467128, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1789173, Length=294, Percent_Identity=27.5510204081633, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788706, Length=291, Percent_Identity=26.1168384879725, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=39.3162393162393, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786448, Length=285, Percent_Identity=26.6666666666667, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1790011, Length=250, Percent_Identity=24, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994962, Length=290, Percent_Identity=26.2068965517241, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=122, Percent_Identity=31.9672131147541, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787879, Length=285, Percent_Identity=24.9122807017544, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787601, Length=138, Percent_Identity=30.4347826086957, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790262, Length=286, Percent_Identity=26.5734265734266, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32553; Mature: 32553

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLGGFVVFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTA
CCCCCCEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCEEEEEE
EGTRFLERCRRVLAELDAAEQELTHSAEAPRGRLRVSLPTIGTLLLPVLADFMAAYPEIE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCEE
LDIDFSDRLVDVVDEGFDAVLRTGQPSDSRLSSRLLGHFRQHLVASPDYLDRHGTPRTPA
EEECHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCH
DLTQHRCLHYRFPTSGKLETWPLRVPRAGTLPEVPVAMVSNSAEARLCFALRGLGIACLP
HHHHHCEEEEECCCCCCCEECCEECCCCCCCCCCCHHHHCCCCHHHHHHHHHCCCHHHHH
IFFVRDALEDGTLRAVLDEHIASCTPIYVLWPSGRHPTPKLRAFVDYMAAHLPV
HHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MENLGGFVVFVQVAETRSFVAAGRALGLSASAIGKRIARLEARLNVRLFHRSTRSITLTA
CCCCCCEEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCEEEEEE
EGTRFLERCRRVLAELDAAEQELTHSAEAPRGRLRVSLPTIGTLLLPVLADFMAAYPEIE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCEE
LDIDFSDRLVDVVDEGFDAVLRTGQPSDSRLSSRLLGHFRQHLVASPDYLDRHGTPRTPA
EEECHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCH
DLTQHRCLHYRFPTSGKLETWPLRVPRAGTLPEVPVAMVSNSAEARLCFALRGLGIACLP
HHHHHCEEEEECCCCCCCEECCEECCCCCCCCCCCHHHHCCCCHHHHHHHHHCCCHHHHH
IFFVRDALEDGTLRAVLDEHIASCTPIYVLWPSGRHPTPKLRAFVDYMAAHLPV
HHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]