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The map label for this gene is ybaK [H]

Identifier: 78067358

GI number: 78067358

Start: 3009214

End: 3009705

Strand: Reverse

Name: ybaK [H]

Synonym: Bcep18194_A5889

Alternate gene names: 78067358

Gene position: 3009705-3009214 (Counterclockwise)

Preceding gene: 78067360

Following gene: 229260090

Centisome position: 81.47

GC content: 67.48

Gene sequence:

>492_bases
ATGAGCAAATCCAGGCATGTGTCCGAAACCCCCGCGACCCAGTTGCTGCGCCGCCACGGCGTCGCGTTCGGCGAGCACCC
GTACGACTACGTCGAGCACGGCGGCACCGGTGAATCGGCGCGCCAGCTCGGCGTCGACGAGCACAGCGTCGTGAAGACGC
TCGTGATGGAAGACGAGCACGCGAAGCCGCTGATCGTGCTGATGCACGGCGATCGCACCGTATCGACGAAGAACCTCGCG
CGGCAGATCGGCGCGAAGCGCGTCGAGCCGTGCAAGCCCGAGGTCGCGAACCGCCATTCGGGCTATCTCGTCGGCGGCAC
GTCACCGTTCGGCACGCGCAAGGCGATGCCCGTCTACGTCGAGGCGACGATCCTCGAACTGCCGACGATCTACCTGAACG
GCGGCCGTCGCGGCTACCTCGTCAGCCTCGCGCCGGCCGTGCTCACGTCGCTGCTCGGCGCACAGCCCGTACAGTGCGCC
AGTGTTGACTGA

Upstream 100 bases:

>100_bases
GCGGGCCGCCCGGTGAAAAACGGGCCGCGAGTATACCGCCGGCACGACCGGCGAGCGCGCCATTGCGCGCTCGCCGGTCG
TTCACCATTAAAATGCCGCC

Downstream 100 bases:

>100_bases
GGGTTTCACCTTCGTGGCAGGCCGCGCGCGTTCGGTAGAATGGGCGCCGTTTCGGCGTGCCGCGCGCAGCCGTCCCTTTA
CCGATACGTTGAAAGAAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSKSRHVSETPATQLLRRHGVAFGEHPYDYVEHGGTGESARQLGVDEHSVVKTLVMEDEHAKPLIVLMHGDRTVSTKNLA
RQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKAMPVYVEATILELPTIYLNGGRRGYLVSLAPAVLTSLLGAQPVQCA
SVD

Sequences:

>Translated_163_residues
MSKSRHVSETPATQLLRRHGVAFGEHPYDYVEHGGTGESARQLGVDEHSVVKTLVMEDEHAKPLIVLMHGDRTVSTKNLA
RQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKAMPVYVEATILELPTIYLNGGRRGYLVSLAPAVLTSLLGAQPVQCA
SVD
>Mature_162_residues
SKSRHVSETPATQLLRRHGVAFGEHPYDYVEHGGTGESARQLGVDEHSVVKTLVMEDEHAKPLIVLMHGDRTVSTKNLAR
QIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKAMPVYVEATILELPTIYLNGGRRGYLVSLAPAVLTSLLGAQPVQCAS
VD

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=160, Percent_Identity=35.625, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17639; Mature: 17508

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSRHVSETPATQLLRRHGVAFGEHPYDYVEHGGTGESARQLGVDEHSVVKTLVMEDEH
CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHCCCCHHHHHHHHHHCCCC
AKPLIVLMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKAMPVYV
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEE
EATILELPTIYLNGGRRGYLVSLAPAVLTSLLGAQPVQCASVD
EEEEEECCEEEECCCCCEEEEEEHHHHHHHHHCCCCCEECCCC
>Mature Secondary Structure 
SKSRHVSETPATQLLRRHGVAFGEHPYDYVEHGGTGESARQLGVDEHSVVKTLVMEDEH
CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHCCCCHHHHHHHHHHCCCC
AKPLIVLMHGDRTVSTKNLARQIGAKRVEPCKPEVANRHSGYLVGGTSPFGTRKAMPVYV
CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEE
EATILELPTIYLNGGRRGYLVSLAPAVLTSLLGAQPVQCASVD
EEEEEECCEEEECCCCCEEEEEEHHHHHHHHHCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]