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The map label for this gene is radC

Identifier: 78067302

GI number: 78067302

Start: 2947004

End: 2947777

Strand: Direct

Name: radC

Synonym: Bcep18194_A5833

Alternate gene names: 78067302

Gene position: 2947004-2947777 (Clockwise)

Preceding gene: 78067293

Following gene: 78067303

Centisome position: 79.78

GC content: 70.67

Gene sequence:

>774_bases
ATGCTGTCACCCTGCCCAGCCTTGCCGCCCGCCGAATGCCGCGACAGCACCGATCTGCCGGCCGATCCGCCCGGTCGCGT
CCTCCCGCTCCACCGGCTCAAGCGCCGCCCGCGCGGCTGGCGGCCCGAGCGGCCGCGCGAGCGATTGCTGGAGCGCGGGC
CGGCCGCGCTGACCGACGACGAACTGATCGCCCTGCTGCTCGGCACGGGCAAGCCCGGGCACGACGTGTTCGCCACCGCC
CGCGTGCTGGTCACGCAGTTCAAGTCGTTGCACGGGCTGCTCGAGGCGACCGCCGACGATTTCGAGGCGCACCCCGGCAT
CGGCCCCGCGCGCTCCGCACGGCTGGTTGCGGTCACCGAGATCGCGCGTCGCATGCTGAAGGAGAAAGCGCACGAGAAGC
AGCCGATCGATTCGCCCGGCGCGGTCGAGGACTATCTGCGGCTGAAGATCGGCGCACGCCCGTACGAGGTGTTCGCCGCG
GTCTACCTCGACGCGCGCCACCGCCTGATCGACATGGAGGAAATCACGCGCGGCTCGCTGACGCGCATGGCCGTCTACCC
GCGCGAGATCGTGCGCCGCGCGATGGTGCACAACGCCGCGGCACTGATCGTCGCGCACAACCATCCGTCGGGCGCGGTGC
AGCCGAGCGCGGAAGATCGCCGCCTGACCCGCGTGCTGCACGACGCGCTCGCGCTCGTCGACGTACGACTGCTCGATCAC
GTCGTAATCGGCATCAGCGATACTTTTTCGTTCGCACGGGCCGGCTGGCTGTAG

Upstream 100 bases:

>100_bases
AAGGCCCGGCGCAAAGCCAATATTGTAAGTCACCTGAGCGCGCAAGGCGGAAAGTGCGACGACGTCGCGCACACCGCCCG
CCGCCAATGGAGTTTCGAGC

Downstream 100 bases:

>100_bases
ACTGTGCGGTTGCGGCCCGCCCAAGGGCGCCGCAACGGCGATGCGAAATTAGGTTTGATTTTCCTGAGCTTTTTCTGCTA
GAATCGCCGTCTGTATTTTT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MLSPCPALPPAECRDSTDLPADPPGRVLPLHRLKRRPRGWRPERPRERLLERGPAALTDDELIALLLGTGKPGHDVFATA
RVLVTQFKSLHGLLEATADDFEAHPGIGPARSARLVAVTEIARRMLKEKAHEKQPIDSPGAVEDYLRLKIGARPYEVFAA
VYLDARHRLIDMEEITRGSLTRMAVYPREIVRRAMVHNAAALIVAHNHPSGAVQPSAEDRRLTRVLHDALALVDVRLLDH
VVIGISDTFSFARAGWL

Sequences:

>Translated_257_residues
MLSPCPALPPAECRDSTDLPADPPGRVLPLHRLKRRPRGWRPERPRERLLERGPAALTDDELIALLLGTGKPGHDVFATA
RVLVTQFKSLHGLLEATADDFEAHPGIGPARSARLVAVTEIARRMLKEKAHEKQPIDSPGAVEDYLRLKIGARPYEVFAA
VYLDARHRLIDMEEITRGSLTRMAVYPREIVRRAMVHNAAALIVAHNHPSGAVQPSAEDRRLTRVLHDALALVDVRLLDH
VVIGISDTFSFARAGWL
>Mature_257_residues
MLSPCPALPPAECRDSTDLPADPPGRVLPLHRLKRRPRGWRPERPRERLLERGPAALTDDELIALLLGTGKPGHDVFATA
RVLVTQFKSLHGLLEATADDFEAHPGIGPARSARLVAVTEIARRMLKEKAHEKQPIDSPGAVEDYLRLKIGARPYEVFAA
VYLDARHRLIDMEEITRGSLTRMAVYPREIVRRAMVHNAAALIVAHNHPSGAVQPSAEDRRLTRVLHDALALVDVRLLDH
VVIGISDTFSFARAGWL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=40.8450704225352, Blast_Score=180, Evalue=7e-47,
Organism=Escherichia coli, GI1788312, Length=120, Percent_Identity=44.1666666666667, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=45.0819672131148, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788997, Length=120, Percent_Identity=44.1666666666667, Blast_Score=108, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y5833_BURS3 (Q39DN9)

Other databases:

- EMBL:   CP000151
- RefSeq:   YP_370071.1
- ProteinModelPortal:   Q39DN9
- SMR:   Q39DN9
- STRING:   Q39DN9
- GeneID:   3751064
- GenomeReviews:   CP000151_GR
- KEGG:   bur:Bcep18194_A5833
- NMPDR:   fig|269483.3.peg.6459
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- ProtClustDB:   PRK00024
- BioCyc:   BSP36773:BCEP18194_A5833-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 28488; Mature: 28488

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSPCPALPPAECRDSTDLPADPPGRVLPLHRLKRRPRGWRPERPRERLLERGPAALTDD
CCCCCCCCCCHHCCCCCCCCCCCCCCEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCH
ELIALLLGTGKPGHDVFATARVLVTQFKSLHGLLEATADDFEAHPGIGPARSARLVAVTE
HEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
IARRMLKEKAHEKQPIDSPGAVEDYLRLKIGARPYEVFAAVYLDARHRLIDMEEITRGSL
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCH
TRMAVYPREIVRRAMVHNAAALIVAHNHPSGAVQPSAEDRRLTRVLHDALALVDVRLLDH
HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVIGISDTFSFARAGWL
HHHCCHHHHHHHHHCCC
>Mature Secondary Structure
MLSPCPALPPAECRDSTDLPADPPGRVLPLHRLKRRPRGWRPERPRERLLERGPAALTDD
CCCCCCCCCCHHCCCCCCCCCCCCCCEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCH
ELIALLLGTGKPGHDVFATARVLVTQFKSLHGLLEATADDFEAHPGIGPARSARLVAVTE
HEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
IARRMLKEKAHEKQPIDSPGAVEDYLRLKIGARPYEVFAAVYLDARHRLIDMEEITRGSL
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCH
TRMAVYPREIVRRAMVHNAAALIVAHNHPSGAVQPSAEDRRLTRVLHDALALVDVRLLDH
HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVIGISDTFSFARAGWL
HHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA