Click here to switch to the map view.

The map label for this gene is pecT [H]

Identifier: 78067283

GI number: 78067283

Start: 2930456

End: 2931352

Strand: Direct

Name: pecT [H]

Synonym: Bcep18194_A5814

Alternate gene names: 78067283

Gene position: 2930456-2931352 (Clockwise)

Preceding gene: 78067281

Following gene: 78067288

Centisome position: 79.33

GC content: 72.69

Gene sequence:

>897_bases
ATGGACCCGCTGACCGATCCCGCATCGACCTCGCTCGACATCACGCTGCTGCGCACCTTCCTCGAAGTCGTCGACAGCCG
CGGGTTCGCGCCGGCCGCGGAACGGCTCGCGCTGACGCCGTCCGCCGTCAGCGGCCACATCAAGCGGCTCGAACAGGCGG
CCGGCACGGTGCTGCTCGCGCGCACGACCCGCCGCATCGCGCTTACGCCAGCCGGCGACACGCTGTACGCGTACGCGCGC
AACATCGTCGACATGGAGCGCGAAGTGCGCGCGAGGCTGCGCGGCGCGCCGGCGCACGGGCCGCTACGGGTCGGCGCGTC
GGAGGATTTCGCGGGCGCGTGGCTGCCGCAGGTGCTGCGCACGTTTCGCGACCGTCACCCGCGCACGTCGATCGAGCTGA
AGGTCGGCATCACCGCGTCGCTGCTGCGCGAGCAGACGCTCGGCCGGCTCGACGTCGTGTTCGGCAAGCAGTGCCGGCAG
GTCGACACCCCGGGCGAACTGCTGTGGGAAGAACCGCTCGTGTGGGCGTTCGCGTCGGATCGCGCGCTCGACGCCGGCGA
CGACGTGCCGCTCGCGCTGTTTCCGCAGCCATGCGTCTATCGGGAAGCCGCCGTCGCGGCACTTGCCGCTGCACTGCGGT
CGTTCCGCGTGCTGTTCGAGAGCAGCAGCATGGCCGGCTGCGTGTCGGCCGCGCTCGCGGGCTTCGCGGTCACCGCGTTG
GCGCGCAGCCAGCTGCGCGACGGCCTGCGCGAATGCGGGCCGCAGGACGGTCTGCCGGCGCTGCCGGCCGCGCGCTTTTA
CGCATTCGCCGCGAAACCGGACGGCGCCGGCGCGGCATTGATCGATGCGGTGCGGGAAACCGGGCGCAGCCGGCAGTTCG
CGGCGCTGCCCGACTGA

Upstream 100 bases:

>100_bases
CTCCGTTGGGTCGATCCGAGTGCACGATGGTAGGCCGGCCTTTCATCACGATTCACGGAGTATCATTGTTCATTCTTCGA
GTATTGCGTTGAATTGATCC

Downstream 100 bases:

>100_bases
AACACGCACGACGGCGCGTGACGGCAACCGGCCGTGCCGGTCAGTCGCCCTCCGCGCCCGCGCCCTCCCCGCCGCTCGTC
AGCGCGTTCGCCATCAGTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MDPLTDPASTSLDITLLRTFLEVVDSRGFAPAAERLALTPSAVSGHIKRLEQAAGTVLLARTTRRIALTPAGDTLYAYAR
NIVDMEREVRARLRGAPAHGPLRVGASEDFAGAWLPQVLRTFRDRHPRTSIELKVGITASLLREQTLGRLDVVFGKQCRQ
VDTPGELLWEEPLVWAFASDRALDAGDDVPLALFPQPCVYREAAVAALAAALRSFRVLFESSSMAGCVSAALAGFAVTAL
ARSQLRDGLRECGPQDGLPALPAARFYAFAAKPDGAGAALIDAVRETGRSRQFAALPD

Sequences:

>Translated_298_residues
MDPLTDPASTSLDITLLRTFLEVVDSRGFAPAAERLALTPSAVSGHIKRLEQAAGTVLLARTTRRIALTPAGDTLYAYAR
NIVDMEREVRARLRGAPAHGPLRVGASEDFAGAWLPQVLRTFRDRHPRTSIELKVGITASLLREQTLGRLDVVFGKQCRQ
VDTPGELLWEEPLVWAFASDRALDAGDDVPLALFPQPCVYREAAVAALAAALRSFRVLFESSSMAGCVSAALAGFAVTAL
ARSQLRDGLRECGPQDGLPALPAARFYAFAAKPDGAGAALIDAVRETGRSRQFAALPD
>Mature_298_residues
MDPLTDPASTSLDITLLRTFLEVVDSRGFAPAAERLALTPSAVSGHIKRLEQAAGTVLLARTTRRIALTPAGDTLYAYAR
NIVDMEREVRARLRGAPAHGPLRVGASEDFAGAWLPQVLRTFRDRHPRTSIELKVGITASLLREQTLGRLDVVFGKQCRQ
VDTPGELLWEEPLVWAFASDRALDAGDDVPLALFPQPCVYREAAVAALAAALRSFRVLFESSSMAGCVSAALAGFAVTAL
ARSQLRDGLRECGPQDGLPALPAARFYAFAAKPDGAGAALIDAVRETGRSRQFAALPD

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=256, Percent_Identity=31.640625, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI48994962, Length=155, Percent_Identity=32.258064516129, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790399, Length=187, Percent_Identity=27.807486631016, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=31.4685314685315, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787806, Length=247, Percent_Identity=23.8866396761134, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788481, Length=249, Percent_Identity=26.9076305220884, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788887, Length=177, Percent_Identity=32.7683615819209, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786401, Length=121, Percent_Identity=34.7107438016529, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788706, Length=139, Percent_Identity=29.4964028776978, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787601, Length=150, Percent_Identity=26, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788748, Length=186, Percent_Identity=31.1827956989247, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31961; Mature: 31961

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPLTDPASTSLDITLLRTFLEVVDSRGFAPAAERLALTPSAVSGHIKRLEQAAGTVLLA
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCEEEEE
RTTRRIALTPAGDTLYAYARNIVDMEREVRARLRGAPAHGPLRVGASEDFAGAWLPQVLR
ECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHH
TFRDRHPRTSIELKVGITASLLREQTLGRLDVVFGKQCRQVDTPGELLWEEPLVWAFASD
HHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEECC
RALDAGDDVPLALFPQPCVYREAAVAALAAALRSFRVLFESSSMAGCVSAALAGFAVTAL
CCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ARSQLRDGLRECGPQDGLPALPAARFYAFAAKPDGAGAALIDAVRETGRSRQFAALPD
HHHHHHHHHHHCCCCCCCCCCCHHHHEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDPLTDPASTSLDITLLRTFLEVVDSRGFAPAAERLALTPSAVSGHIKRLEQAAGTVLLA
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCEEEEE
RTTRRIALTPAGDTLYAYARNIVDMEREVRARLRGAPAHGPLRVGASEDFAGAWLPQVLR
ECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHH
TFRDRHPRTSIELKVGITASLLREQTLGRLDVVFGKQCRQVDTPGELLWEEPLVWAFASD
HHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEECC
RALDAGDDVPLALFPQPCVYREAAVAALAAALRSFRVLFESSSMAGCVSAALAGFAVTAL
CCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ARSQLRDGLRECGPQDGLPALPAARFYAFAAKPDGAGAALIDAVRETGRSRQFAALPD
HHHHHHHHHHHCCCCCCCCCCCHHHHEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]