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The map label for this gene is ycaN [H]

Identifier: 78067279

GI number: 78067279

Start: 2926731

End: 2927633

Strand: Reverse

Name: ycaN [H]

Synonym: Bcep18194_A5810

Alternate gene names: 78067279

Gene position: 2927633-2926731 (Counterclockwise)

Preceding gene: 78067282

Following gene: 78067275

Centisome position: 79.25

GC content: 68.0

Gene sequence:

>903_bases
ATGGCATTCGACAGCAGGCTTTTGAGCGGCATCGGCGTGCTCTCGGCGGTGATCGAGGCCGGCACCTTCGCGCGCGCCGG
TGAGGCGATGGGGCTGACGCAGCCGGCGGTGAGCCGTGCCGTCGCCCGGCTGGAAGAGCGCGTCGGCATCCGGATCTTCA
ACCGCACGGCGCGCGCGATCACGCTGACCGACGAAGGGCGGCGCTTCTATGAAGCGGTCGCGCCGCTGCTGGCCGGCATC
GAAGATGCGGCGATCGACGCCGGCCAGTCGAAGGCGCGTGTCAGGGGGCGGCTGCGCGTCAACGTCGACGCGACCTTCGG
CCACTACGTGCTGGCGCCGAAGATGGCGGAGTTTCTCGACCGCTTTCCCGACCTGTCGGTCGAAATCAGCGTGCGCGACC
GGATGGGCGATCTCGTCGCCGACGGGTTCGACGTGGCGGTGCGGTTCGGTATTCCGGAGCCGTCGTCATACCGTGCGCGG
CTGCTGCTGGAAACGCGCGTGCTCACTTGCGCGTCGGCGGCCTATGTCGCGCGTCACGGCGAACCGCGGCACCCGCGGGA
TCTTGCGGACGGGCATCGTTGCGTGCTGATCCGCGATCCAGTGACGGGGCGGCCGTTCGAATGGGAATTCCATCGCGGCA
AGGAGGTGGTGCCGTTCGATGCCGCCGGCCGGCTGATGGTCAACGACACGGGCATGCTGCTCGGCGCGTGCCTGGGTGGC
GCGGGGATCGCGCAGTTGCTGGAGCTCTATGCGCGCGACATCCTCGCCGACGGGCGGCTGATGCTGCTGCTGCCGGAGTG
GGCGGACGAGAAGTTTCCGCTTTACGCGTATCACCACGCGTCCAATCTCGTTTCGGCGAAGGTACGCGTGTTTCTCGACT
TCGTTCGGGCGTTGATGGCCTGA

Upstream 100 bases:

>100_bases
GTGAGTGCCGTGTGATCCGGCGACAGGACTAATGTAGGCTTCCTCAGTCAATAAAAATAATGAATAATGATCAGATCAAG
AATGACTAAAAGTATGTCTC

Downstream 100 bases:

>100_bases
GCCTGAGCTGAGTTGACGTGCCGACGACGGCTTTCCCGCGCGTTCATTCGGTGCGATGCGGAATATTGTCCGGGAACGGG
TAGGGCGCGTGCGGGCCCGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAITLTDEGRRFYEAVAPLLAGI
EDAAIDAGQSKARVRGRLRVNVDATFGHYVLAPKMAEFLDRFPDLSVEISVRDRMGDLVADGFDVAVRFGIPEPSSYRAR
LLLETRVLTCASAAYVARHGEPRHPRDLADGHRCVLIRDPVTGRPFEWEFHRGKEVVPFDAAGRLMVNDTGMLLGACLGG
AGIAQLLELYARDILADGRLMLLLPEWADEKFPLYAYHHASNLVSAKVRVFLDFVRALMA

Sequences:

>Translated_300_residues
MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAITLTDEGRRFYEAVAPLLAGI
EDAAIDAGQSKARVRGRLRVNVDATFGHYVLAPKMAEFLDRFPDLSVEISVRDRMGDLVADGFDVAVRFGIPEPSSYRAR
LLLETRVLTCASAAYVARHGEPRHPRDLADGHRCVLIRDPVTGRPFEWEFHRGKEVVPFDAAGRLMVNDTGMLLGACLGG
AGIAQLLELYARDILADGRLMLLLPEWADEKFPLYAYHHASNLVSAKVRVFLDFVRALMA
>Mature_299_residues
AFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAITLTDEGRRFYEAVAPLLAGIE
DAAIDAGQSKARVRGRLRVNVDATFGHYVLAPKMAEFLDRFPDLSVEISVRDRMGDLVADGFDVAVRFGIPEPSSYRARL
LLETRVLTCASAAYVARHGEPRHPRDLADGHRCVLIRDPVTGRPFEWEFHRGKEVVPFDAAGRLMVNDTGMLLGACLGGA
GIAQLLELYARDILADGRLMLLLPEWADEKFPLYAYHHASNLVSAKVRVFLDFVRALMA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=32.3024054982818, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1789440, Length=293, Percent_Identity=29.3515358361775, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=30.4498269896194, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI145693193, Length=283, Percent_Identity=30.0353356890459, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789639, Length=288, Percent_Identity=28.4722222222222, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=29.1525423728814, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787589, Length=281, Percent_Identity=24.1992882562278, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1789173, Length=291, Percent_Identity=24.7422680412371, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI157672245, Length=182, Percent_Identity=32.4175824175824, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786448, Length=245, Percent_Identity=26.1224489795918, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788706, Length=192, Percent_Identity=26.0416666666667, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788748, Length=145, Percent_Identity=31.7241379310345, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788481, Length=305, Percent_Identity=24.9180327868852, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790011, Length=263, Percent_Identity=23.574144486692, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI145693105, Length=167, Percent_Identity=24.5508982035928, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787601, Length=129, Percent_Identity=25.5813953488372, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32947; Mature: 32816

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI
CCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCEEE
TLTDEGRRFYEAVAPLLAGIEDAAIDAGQSKARVRGRLRVNVDATFGHYVLAPKMAEFLD
EEECCCHHHHHHHHHHHHCCHHHHHCCCCCHHEEEEEEEEEEECCCCCEEEHHHHHHHHH
RFPDLSVEISVRDRMGDLVADGFDVAVRFGIPEPSSYRARLLLETRVLTCASAAYVARHG
HCCCCEEEEEEHHHHHHHHHCCEEEEEEECCCCCCCHHHEEEHHHHHHHHHHHHHHHHCC
EPRHPRDLADGHRCVLIRDPVTGRPFEWEFHRGKEVVPFDAAGRLMVNDTGMLLGACLGG
CCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCEEECCCCCCEEEEECCHHHHHHHHCC
AGIAQLLELYARDILADGRLMLLLPEWADEKFPLYAYHHASNLVSAKVRVFLDFVRALMA
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
AFDSRLLSGIGVLSAVIEAGTFARAGEAMGLTQPAVSRAVARLEERVGIRIFNRTARAI
CCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCEEE
TLTDEGRRFYEAVAPLLAGIEDAAIDAGQSKARVRGRLRVNVDATFGHYVLAPKMAEFLD
EEECCCHHHHHHHHHHHHCCHHHHHCCCCCHHEEEEEEEEEEECCCCCEEEHHHHHHHHH
RFPDLSVEISVRDRMGDLVADGFDVAVRFGIPEPSSYRARLLLETRVLTCASAAYVARHG
HCCCCEEEEEEHHHHHHHHHCCEEEEEEECCCCCCCHHHEEEHHHHHHHHHHHHHHHHCC
EPRHPRDLADGHRCVLIRDPVTGRPFEWEFHRGKEVVPFDAAGRLMVNDTGMLLGACLGG
CCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCEEECCCCCCEEEEECCHHHHHHHHCC
AGIAQLLELYARDILADGRLMLLLPEWADEKFPLYAYHHASNLVSAKVRVFLDFVRALMA
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]