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The map label for this gene is cobD

Identifier: 78067248

GI number: 78067248

Start: 2894668

End: 2895612

Strand: Direct

Name: cobD

Synonym: Bcep18194_A5779

Alternate gene names: 78067248

Gene position: 2894668-2895612 (Clockwise)

Preceding gene: 78067247

Following gene: 78067249

Centisome position: 78.36

GC content: 74.07

Gene sequence:

>945_bases
ATGCTGATGCTGTCGCTGCCCGTCGTCGCGATGTTCGCGGTCGCGGCTGCGATCATCGACCGCGCGATCGGCGAGCCGGC
CGGCTGGCACCCGCTCGTCGCGTTCGGCCGCCTCGCCGCGCGCATCGAAGGCGCGCTGAACACCGGCCGGCGCGGCCGCG
TGGTTGGCGTCGCCGCGTGGATCGCGGCGGTCGTGCCGCCGGTCGCCATCGCGGCATGGCTCGCAGCCGTGCTGCCGTGG
CCGCTCGCGGCCGCGCTGCACATCGCGCTGCTGTGGTTCGCACTCGGCGCGAAAAGCCTCACCGACCACGTCGCGCCGAT
CGCGGCGGCCTTGCTGCGGCATGACCTCGGCGCCGCCCGCGCGCTGACCGCGCGCATCGTGTCGCGCGACACGAGCGATG
CGGACGAAGGCGCGCTGTCGCGCGCGGCCGTCGAATCGGCACTCGAGAACGGCAACGACGCGATCTTCGGTGCGCTGTTC
TGGTTCGTCGTCGCGGGCGGCCCCGGCGCGCTGCTGTTCCGGCTCGCGAACACGCTCGACGCGATGTGGGGCTACCGCAC
GCCGCGCTTCCTGACTTTCGGCTGGGCCGCCGCGCGCCTCGACGACGCACTGAACTGGGTGCCCGCGCGCCTCACGGCCG
CGAGCTACGCGCTGCTCGGCGACACGGCCGCCGCATGGCGCTGCTGGCGCACGCAGGCGCACCACTGGGACAGCCCGAAC
GCGGGCCCGGTGATGGCTGCCGGCGCCGGCAGTTTGAACGTGCAGCTCGGCGGCCCGGCCGTCTATCACGGCGAGATCGA
GGACCGTCCCGCGCTCGGCACCGGCGCCGCGGCGACCGCCGTCCACATCGTCGCCGCGCTGTCGCTCGTCACGCGCACGC
TTGCCCTGTGGCTCGCGCTGCTGGTCGCAAGCGGCGCACTCGCCATGGCCACTCATCATGTCTGA

Upstream 100 bases:

>100_bases
ACGAACTCGGGCGCCTGAACCAGCGCGTCGCCGCACTCGCGACGCGCGTGACGCTGCTCGTCGCCGGACTGCCGCTCGAC
CTCAAGACCGGAGCGCCGTC

Downstream 100 bases:

>100_bases
CACACACATCGCGCACGGCGGCAACCTGCATGAAGCCGCACGCCGCCACGGCATTCCGTACGACGCGTGGCTTGACCTGT
CGACCGGCATCAATCCGGTC

Product: cobalamin biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLMLSLPVVAMFAVAAAIIDRAIGEPAGWHPLVAFGRLAARIEGALNTGRRGRVVGVAAWIAAVVPPVAIAAWLAAVLPW
PLAAALHIALLWFALGAKSLTDHVAPIAAALLRHDLGAARALTARIVSRDTSDADEGALSRAAVESALENGNDAIFGALF
WFVVAGGPGALLFRLANTLDAMWGYRTPRFLTFGWAAARLDDALNWVPARLTAASYALLGDTAAAWRCWRTQAHHWDSPN
AGPVMAAGAGSLNVQLGGPAVYHGEIEDRPALGTGAAATAVHIVAALSLVTRTLALWLALLVASGALAMATHHV

Sequences:

>Translated_314_residues
MLMLSLPVVAMFAVAAAIIDRAIGEPAGWHPLVAFGRLAARIEGALNTGRRGRVVGVAAWIAAVVPPVAIAAWLAAVLPW
PLAAALHIALLWFALGAKSLTDHVAPIAAALLRHDLGAARALTARIVSRDTSDADEGALSRAAVESALENGNDAIFGALF
WFVVAGGPGALLFRLANTLDAMWGYRTPRFLTFGWAAARLDDALNWVPARLTAASYALLGDTAAAWRCWRTQAHHWDSPN
AGPVMAAGAGSLNVQLGGPAVYHGEIEDRPALGTGAAATAVHIVAALSLVTRTLALWLALLVASGALAMATHHV
>Mature_314_residues
MLMLSLPVVAMFAVAAAIIDRAIGEPAGWHPLVAFGRLAARIEGALNTGRRGRVVGVAAWIAAVVPPVAIAAWLAAVLPW
PLAAALHIALLWFALGAKSLTDHVAPIAAALLRHDLGAARALTARIVSRDTSDADEGALSRAAVESALENGNDAIFGALF
WFVVAGGPGALLFRLANTLDAMWGYRTPRFLTFGWAAARLDDALNWVPARLTAASYALLGDTAAAWRCWRTQAHHWDSPN
AGPVMAAGAGSLNVQLGGPAVYHGEIEDRPALGTGAAATAVHIVAALSLVTRTLALWLALLVASGALAMATHHV

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: NA

Molecular weight: Translated: 32613; Mature: 32613

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMLSLPVVAMFAVAAAIIDRAIGEPAGWHPLVAFGRLAARIEGALNTGRRGRVVGVAAW
CEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
IAAVVPPVAIAAWLAAVLPWPLAAALHIALLWFALGAKSLTDHVAPIAAALLRHDLGAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTARIVSRDTSDADEGALSRAAVESALENGNDAIFGALFWFVVAGGPGALLFRLANTLD
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
AMWGYRTPRFLTFGWAAARLDDALNWVPARLTAASYALLGDTAAAWRCWRTQAHHWDSPN
HHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
AGPVMAAGAGSLNVQLGGPAVYHGEIEDRPALGTGAAATAVHIVAALSLVTRTLALWLAL
CCCEEEECCCEEEEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LVASGALAMATHHV
HHHCCHHHHHHCCC
>Mature Secondary Structure
MLMLSLPVVAMFAVAAAIIDRAIGEPAGWHPLVAFGRLAARIEGALNTGRRGRVVGVAAW
CEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
IAAVVPPVAIAAWLAAVLPWPLAAALHIALLWFALGAKSLTDHVAPIAAALLRHDLGAAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALTARIVSRDTSDADEGALSRAAVESALENGNDAIFGALFWFVVAGGPGALLFRLANTLD
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
AMWGYRTPRFLTFGWAAARLDDALNWVPARLTAASYALLGDTAAAWRCWRTQAHHWDSPN
HHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCC
AGPVMAAGAGSLNVQLGGPAVYHGEIEDRPALGTGAAATAVHIVAALSLVTRTLALWLAL
CCCEEEECCCEEEEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LVASGALAMATHHV
HHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA