Click here to switch to the map view.

The map label for this gene is yiaD [H]

Identifier: 78067236

GI number: 78067236

Start: 2878788

End: 2879432

Strand: Direct

Name: yiaD [H]

Synonym: Bcep18194_A5767

Alternate gene names: 78067236

Gene position: 2878788-2879432 (Clockwise)

Preceding gene: 78067230

Following gene: 78067237

Centisome position: 77.93

GC content: 68.22

Gene sequence:

>645_bases
ATGAACATGAAAATCGCGACCCGCTTGTCCGTCTTCGCATTGGCCGGCGCACTGCTGGCAGGCTGCGCCACGCAGCAAGG
CAACAACACGGCCGTCGGTACCGGCACGGGTGCGGCGCTGGGCGCAGGCATCGGCGCGCTGGCAGGCGGCGGCAAGGGCG
CGGCGATCGGCGCAGGCGTCGGCGCACTGGTCGGCGGCGTGACGGGTTACAACTGGCAGGCGATCAAGAACAAGCTGGCA
CCGTCGGCAGCGCAAACGGGTACGCAAGTGACCGAGCAGCCGGACGGCTCGCTGAAGCTGAACGTGCCGAGCTCGGTGAC
GTTCGCGACGAACCAGTACGCGATCACGCCGGCCTTCCAGCCGCTGCTGAACGACCTGGCGACGACGCTGAACCAGAACC
CGCAAGTGACGGCATCGATCGTCGGCTACACGGACAGCACGGGCTCGGCCCAGCTGAACCAGACGCTGTCGCAGAACCGC
GCGCAAAGCGTCGTGAACGCACTGGCACAGCGCGGCGTGAACGGCGGCCGCCTGTCGGCGCAAGGCATGGGCGCATCGAA
CCCGATCGCGGACAACGCGACCGAAGCCGGCCGCGCACAGAACCGCCGCGTCGAAATCTACCTGCGCGCAGCGCAGGCGC
AGTAA

Upstream 100 bases:

>100_bases
CGAGCGCAGGCCTGCCCTCCTTTTTCGGGCGGCCCGCGCAGGGAGCCGTAACTGTTGTTGTCGTCGTTGTCGACTCGTTC
AACCAAGAGAGGAATCCAAG

Downstream 100 bases:

>100_bases
GCACACGAAGAGGGGAAGGCGCGGGCCCACCGCCCGCGCAGCCCCGCCGGACAAGGCTTCCGGCGGAGCCGGTAACAAAT
CGAAAATATTTTCGAACTTC

Product: OmpA/MotB family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MNMKIATRLSVFALAGALLAGCATQQGNNTAVGTGTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLA
PSAAQTGTQVTEQPDGSLKLNVPSSVTFATNQYAITPAFQPLLNDLATTLNQNPQVTASIVGYTDSTGSAQLNQTLSQNR
AQSVVNALAQRGVNGGRLSAQGMGASNPIADNATEAGRAQNRRVEIYLRAAQAQ

Sequences:

>Translated_214_residues
MNMKIATRLSVFALAGALLAGCATQQGNNTAVGTGTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLA
PSAAQTGTQVTEQPDGSLKLNVPSSVTFATNQYAITPAFQPLLNDLATTLNQNPQVTASIVGYTDSTGSAQLNQTLSQNR
AQSVVNALAQRGVNGGRLSAQGMGASNPIADNATEAGRAQNRRVEIYLRAAQAQ
>Mature_214_residues
MNMKIATRLSVFALAGALLAGCATQQGNNTAVGTGTGAALGAGIGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLA
PSAAQTGTQVTEQPDGSLKLNVPSSVTFATNQYAITPAFQPLLNDLATTLNQNPQVTASIVGYTDSTGSAQLNQTLSQNR
AQSVVNALAQRGVNGGRLSAQGMGASNPIADNATEAGRAQNRRVEIYLRAAQAQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=217, Percent_Identity=41.4746543778802, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787191, Length=122, Percent_Identity=36.8852459016393, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788957, Length=114, Percent_Identity=35.0877192982456, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 21352; Mature: 21352

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMKIATRLSVFALAGALLAGCATQQGNNTAVGTGTGAALGAGIGALAGGGKGAAIGAGV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHCHHHHCCCCCCCCHHHHH
GALVGGVTGYNWQAIKNKLAPSAAQTGTQVTEQPDGSLKLNVPSSVTFATNQYAITPAFQ
HHHHHCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCCEEEECCCCEEEECCCEEECHHHH
PLLNDLATTLNQNPQVTASIVGYTDSTGSAQLNQTLSQNRAQSVVNALAQRGVNGGRLSA
HHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
QGMGASNPIADNATEAGRAQNRRVEIYLRAAQAQ
CCCCCCCCCCCCCHHHCCCCCCEEEEEEEECCCC
>Mature Secondary Structure
MNMKIATRLSVFALAGALLAGCATQQGNNTAVGTGTGAALGAGIGALAGGGKGAAIGAGV
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHCHHHHCCCCCCCCHHHHH
GALVGGVTGYNWQAIKNKLAPSAAQTGTQVTEQPDGSLKLNVPSSVTFATNQYAITPAFQ
HHHHHCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCCEEEECCCCEEEECCCEEECHHHH
PLLNDLATTLNQNPQVTASIVGYTDSTGSAQLNQTLSQNRAQSVVNALAQRGVNGGRLSA
HHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
QGMGASNPIADNATEAGRAQNRRVEIYLRAAQAQ
CCCCCCCCCCCCCHHHCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]