Click here to switch to the map view.

The map label for this gene is sodC2 [H]

Identifier: 78067234

GI number: 78067234

Start: 2876675

End: 2877211

Strand: Reverse

Name: sodC2 [H]

Synonym: Bcep18194_A5765

Alternate gene names: 78067234

Gene position: 2877211-2876675 (Counterclockwise)

Preceding gene: 78067235

Following gene: 78067233

Centisome position: 77.89

GC content: 71.32

Gene sequence:

>537_bases
ATGAAACAACGACATCACGGCGTGTATGCCGGCCGCGTGCGGTGCGCGCTGCTGGCCGCCGCCGCGCTGGGCCTGCTGGC
CGGCTGCACCTCCTTTTCCTCGTCGCACGAAAAACGGGCCGACGCACAACTGCAGCCGACAGTCGGCTCGCAGACGCGCG
GCGCGGTGACGTTCGTCGAGCGTCCCGACGGCGTGCAGGTTACCTACAACCTGGCCGGGCTGCCGCCGAACAGCGATCAC
GCCTTGCAGGTACACGAACGCGGCGATTGCAACGCGGGCGACGGCTCGAGCGCCGGCCAGGTGTTCGCGCCGGCGGCCGA
CCGGTTGCGCGCGGGTGCCCGCGTCGCCGGCGATCTCGGCAACATCCACGCGGATTCGAACGGCGTCGCGGCCGGCTTCA
TCGTCGCGCCCGATCTGGCCCTCGATGGCGTGCGGTCGGCGATGAACCGCGCGGCACTGGTGCACCGCGAAGCGAGCGAC
CCCGCGTTTCCGCAGCATGGCGCGGGGCCCGCGCTTGCCTGTGGCGTGATCCGTTGA

Upstream 100 bases:

>100_bases
GGCGCCGCGAGGCGCGGTATCATGGCGACTTTTCCCGGGTCCCTTTACCCGCCCGGCGCGGCCGTCGTGTCAAACGGCCG
CCAGCCGGCATGAGGATCGA

Downstream 100 bases:

>100_bases
CGGCCGCCGCGTGCGCGGCCCGATGATCGCGTAAAATGTGCGCCTTTCCCGGCCGCTGCCTCGCGCGAGGAGCGGCCCTC
ACCGACTGTCACGCAGCGTT

Product: copper/Zinc superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MKQRHHGVYAGRVRCALLAAAALGLLAGCTSFSSSHEKRADAQLQPTVGSQTRGAVTFVERPDGVQVTYNLAGLPPNSDH
ALQVHERGDCNAGDGSSAGQVFAPAADRLRAGARVAGDLGNIHADSNGVAAGFIVAPDLALDGVRSAMNRAALVHREASD
PAFPQHGAGPALACGVIR

Sequences:

>Translated_178_residues
MKQRHHGVYAGRVRCALLAAAALGLLAGCTSFSSSHEKRADAQLQPTVGSQTRGAVTFVERPDGVQVTYNLAGLPPNSDH
ALQVHERGDCNAGDGSSAGQVFAPAADRLRAGARVAGDLGNIHADSNGVAAGFIVAPDLALDGVRSAMNRAALVHREASD
PAFPQHGAGPALACGVIR
>Mature_178_residues
MKQRHHGVYAGRVRCALLAAAALGLLAGCTSFSSSHEKRADAQLQPTVGSQTRGAVTFVERPDGVQVTYNLAGLPPNSDH
ALQVHERGDCNAGDGSSAGQVFAPAADRLRAGARVAGDLGNIHADSNGVAAGFIVAPDLALDGVRSAMNRAALVHREASD
PAFPQHGAGPALACGVIR

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 18193; Mature: 18193

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQRHHGVYAGRVRCALLAAAALGLLAGCTSFSSSHEKRADAQLQPTVGSQTRGAVTFVE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEECCCCCCCCCCEEEEEE
RPDGVQVTYNLAGLPPNSDHALQVHERGDCNAGDGSSAGQVFAPAADRLRAGARVAGDLG
CCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHCCCCEECCCC
NIHADSNGVAAGFIVAPDLALDGVRSAMNRAALVHREASDPAFPQHGAGPALACGVIR
CEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHCCCCCC
>Mature Secondary Structure
MKQRHHGVYAGRVRCALLAAAALGLLAGCTSFSSSHEKRADAQLQPTVGSQTRGAVTFVE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEECCCCCCCCCCEEEEEE
RPDGVQVTYNLAGLPPNSDHALQVHERGDCNAGDGSSAGQVFAPAADRLRAGARVAGDLG
CCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCHHHHHCCCCEECCCC
NIHADSNGVAAGFIVAPDLALDGVRSAMNRAALVHREASDPAFPQHGAGPALACGVIR
CEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]