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The map label for this gene is ubiC [H]

Identifier: 78067154

GI number: 78067154

Start: 2790269

End: 2790865

Strand: Reverse

Name: ubiC [H]

Synonym: Bcep18194_A5685

Alternate gene names: 78067154

Gene position: 2790865-2790269 (Counterclockwise)

Preceding gene: 78067155

Following gene: 78067153

Centisome position: 75.55

GC content: 74.54

Gene sequence:

>597_bases
ATGCGATTCGACGGCGGTCAGGCCGGCTGGCGCGAGACGCCGCGGCCTGGCTGCACGCTCGATCAGCGCGACTGGCTGAC
GCGTGGCGGATCGCTGACCGCGCACCTCGCGCGGCTCGGCCGCGTGAACGTGCGCGTGACGCGCGAGGCCGTCGACTGCC
CGTGGTTCGACGAGCCGGACGCGGTCGCCAGTGCACCGCGCGCGCCGATGTGGGTGCGCGAGGTGATCCTGTCGGTCGAC
GGCACGCCGTACGTCGCCGCGCACAGCATCGCGCCGCTCGCGGCCAGCAAGGGCGTGTGGCAGGCCATGCGGCGGCTGCG
CACGCGGCCGCTGGCGGAGCTGCTGTACAGCGATCCGCAGGTCGAGCGTTCGGCGCTCGTCAGCCGGCGCGTGATCGCCG
GCCATCCGCTGTATGCGCTGGCGACCCATGCGCTTGGCGGGGCGCGAGCGCCGCATTCGTTCGCCGCGCGACGCTCGGTG
TTCCAGCGCCACGGCAAGCCGTTGATGGTCACTGAGTGCATGCTGCCGGCGCTGTGGCGCCATCTCGACGCGCACGGCGA
CGGGCCGCGCTCGGGCGGGCCGGGCGGAGGCGCGTGA

Upstream 100 bases:

>100_bases
ATCAGGCGTTGCTGGCCGAAGGCGGCATGCTCGACGATCCGGCAAGCTTCGTGAAGCGGACCAACGCGCTGCTGCTGTCG
CGCGCCGCGTGAACACACGC

Downstream 100 bases:

>100_bases
TGTTGCGGGGTTTCCCGCCGGTCGTCGCGGCGAATACGCACACGATGATCCTCGGCAGCTTTCCGGGCGAGGCGTCGCTC
GATGCCGCGCAGTACTACGC

Product: chorismate lyase

Products: NA

Alternate protein names: CL; CPL [H]

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MRFDGGQAGWRETPRPGCTLDQRDWLTRGGSLTAHLARLGRVNVRVTREAVDCPWFDEPDAVASAPRAPMWVREVILSVD
GTPYVAAHSIAPLAASKGVWQAMRRLRTRPLAELLYSDPQVERSALVSRRVIAGHPLYALATHALGGARAPHSFAARRSV
FQRHGKPLMVTECMLPALWRHLDAHGDGPRSGGPGGGA

Sequences:

>Translated_198_residues
MRFDGGQAGWRETPRPGCTLDQRDWLTRGGSLTAHLARLGRVNVRVTREAVDCPWFDEPDAVASAPRAPMWVREVILSVD
GTPYVAAHSIAPLAASKGVWQAMRRLRTRPLAELLYSDPQVERSALVSRRVIAGHPLYALATHALGGARAPHSFAARRSV
FQRHGKPLMVTECMLPALWRHLDAHGDGPRSGGPGGGA
>Mature_198_residues
MRFDGGQAGWRETPRPGCTLDQRDWLTRGGSLTAHLARLGRVNVRVTREAVDCPWFDEPDAVASAPRAPMWVREVILSVD
GTPYVAAHSIAPLAASKGVWQAMRRLRTRPLAELLYSDPQVERSALVSRRVIAGHPLYALATHALGGARAPHSFAARRSV
FQRHGKPLMVTECMLPALWRHLDAHGDGPRSGGPGGGA

Specific function: Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway [H]

COG id: COG3161

COG function: function code H; 4-hydroxybenzoate synthetase (chorismate lyase)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007440 [H]

Pfam domain/function: PF04345 Chor_lyase [H]

EC number: =4.1.3.40 [H]

Molecular weight: Translated: 21549; Mature: 21549

Theoretical pI: Translated: 11.11; Mature: 11.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFDGGQAGWRETPRPGCTLDQRDWLTRGGSLTAHLARLGRVNVRVTREAVDCPWFDEPD
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCEEEEHHHCCCCCCCCCH
AVASAPRAPMWVREVILSVDGTPYVAAHSIAPLAASKGVWQAMRRLRTRPLAELLYSDPQ
HHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC
VERSALVSRRVIAGHPLYALATHALGGARAPHSFAARRSVFQRHGKPLMVTECMLPALWR
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHH
HLDAHGDGPRSGGPGGGA
HHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFDGGQAGWRETPRPGCTLDQRDWLTRGGSLTAHLARLGRVNVRVTREAVDCPWFDEPD
CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCCCEEEEHHHCCCCCCCCCH
AVASAPRAPMWVREVILSVDGTPYVAAHSIAPLAASKGVWQAMRRLRTRPLAELLYSDPQ
HHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC
VERSALVSRRVIAGHPLYALATHALGGARAPHSFAARRSVFQRHGKPLMVTECMLPALWR
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHH
HLDAHGDGPRSGGPGGGA
HHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA