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The map label for this gene is yjjV [H]

Identifier: 78066887

GI number: 78066887

Start: 2486847

End: 2487635

Strand: Reverse

Name: yjjV [H]

Synonym: Bcep18194_A5418

Alternate gene names: 78066887

Gene position: 2487635-2486847 (Counterclockwise)

Preceding gene: 78066888

Following gene: 78066886

Centisome position: 67.34

GC content: 67.93

Gene sequence:

>789_bases
ATGTGGATCGACACGCACTGCCATCTCGATGCCGCCGAGTTCGACGCCGACCGCGACGCGGTCGCGCACGCGGCGCGCTC
GGCCGGCGTGTCGCGCATCGTGATCCCGAGCGTCGGGCGCGACAACTTCACGACGGTGCGCGAACTCGCGCAGCACACGC
CGGGCGCGGTCTACGCGCTCGGCATCCATCCGATGTATACGCCACGCGCACGCGACGAGGATCTCGACCTGTTGCGCATG
GAGATCGAGGCGAGCCTCGACGATCCGCGCTTCGTCGCGATCGGCGAGATCGGGCTCGACTATTTCGTGCCCGGGCTCGA
CGAAGACCGGCAGCAGTTCTTCTACCAGGGGCAACTCAAGCTCGCGCGCGAATTCGACTTGCCCGTGCTGTGCCACGTGC
GCAAGTCGCAGGATCGCGTGCTCGCCGGGCTGCGCCGTTTCGGCGTGCGGCGCGGCATCGCGCATGCGTTCAACGGCAGT
TTCCAGCAGGCCGAAGCGTATCTCGCACACGGGCTTCATCTCGGTTTCGGCGGCAACGTGACCTTCACGCGCGCGCTGCA
GATCCGCCGGCTCGCGGCGCAATTGCCGCTCGAGGCGATCGTCGTCGAGACGGACGCGCCCGACATCGCGCCCGAATGGG
CGTACAAATCCCGCAACACGCCCGACCAGGTGCCGCGCATCGGCGACGTGCTTGCCGAACTGCGCGGGATCGACGCCGGC
GCAGTGTCCCTATGCACTTCGGCTAACGCGCTCGCCGCGCTGCCGCGACTCGCACTTTCGTCCGCATAA

Upstream 100 bases:

>100_bases
GTGCTGCACGAGGAGCCGGCGCTGCCGGTGTAAGAAGCGAACGCGCTTGGCCTGCTGCCGGGGTTGCCCCGGCGCGGCGC
CAGGGCGCAGGACTGCCGCC

Downstream 100 bases:

>100_bases
TCGTTGCCGGAAGGCGCCGCATGCTCAAGGGCGGTGCCGGGTCGACGAGGAGGGGCGATGCGCGTGTGGTGGATCGCGTT
CGCGCTCGGCGTGGTCGTGC

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MWIDTHCHLDAAEFDADRDAVAHAARSAGVSRIVIPSVGRDNFTTVRELAQHTPGAVYALGIHPMYTPRARDEDLDLLRM
EIEASLDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLKLAREFDLPVLCHVRKSQDRVLAGLRRFGVRRGIAHAFNGS
FQQAEAYLAHGLHLGFGGNVTFTRALQIRRLAAQLPLEAIVVETDAPDIAPEWAYKSRNTPDQVPRIGDVLAELRGIDAG
AVSLCTSANALAALPRLALSSA

Sequences:

>Translated_262_residues
MWIDTHCHLDAAEFDADRDAVAHAARSAGVSRIVIPSVGRDNFTTVRELAQHTPGAVYALGIHPMYTPRARDEDLDLLRM
EIEASLDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLKLAREFDLPVLCHVRKSQDRVLAGLRRFGVRRGIAHAFNGS
FQQAEAYLAHGLHLGFGGNVTFTRALQIRRLAAQLPLEAIVVETDAPDIAPEWAYKSRNTPDQVPRIGDVLAELRGIDAG
AVSLCTSANALAALPRLALSSA
>Mature_262_residues
MWIDTHCHLDAAEFDADRDAVAHAARSAGVSRIVIPSVGRDNFTTVRELAQHTPGAVYALGIHPMYTPRARDEDLDLLRM
EIEASLDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLKLAREFDLPVLCHVRKSQDRVLAGLRRFGVRRGIAHAFNGS
FQQAEAYLAHGLHLGFGGNVTFTRALQIRRLAAQLPLEAIVVETDAPDIAPEWAYKSRNTPDQVPRIGDVLAELRGIDAG
AVSLCTSANALAALPRLALSSA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=269, Percent_Identity=31.9702602230483, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI110349734, Length=269, Percent_Identity=31.9702602230483, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=30.8823529411765, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI226061614, Length=258, Percent_Identity=29.4573643410853, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI226061595, Length=228, Percent_Identity=31.140350877193, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI225903424, Length=168, Percent_Identity=30.952380952381, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI14042943, Length=252, Percent_Identity=25.7936507936508, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI87082439, Length=235, Percent_Identity=39.5744680851064, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1787342, Length=254, Percent_Identity=29.9212598425197, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI48994985, Length=255, Percent_Identity=29.0196078431373, Blast_Score=108, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI71980746, Length=258, Percent_Identity=25.5813953488372, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17559024, Length=277, Percent_Identity=24.5487364620939, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24648690, Length=278, Percent_Identity=26.978417266187, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI221330018, Length=212, Percent_Identity=27.3584905660377, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24586117, Length=212, Percent_Identity=27.3584905660377, Blast_Score=72, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28764; Mature: 28764

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIDTHCHLDAAEFDADRDAVAHAARSAGVSRIVIPSVGRDNFTTVRELAQHTPGAVYAL
CEECCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEE
GIHPMYTPRARDEDLDLLRMEIEASLDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLK
ECCCCCCCCCCCCCHHHEEEEHHCCCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHCHHH
LAREFDLPVLCHVRKSQDRVLAGLRRFGVRRGIAHAFNGSFQQAEAYLAHGLHLGFGGNV
HHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEECCCCCE
TFTRALQIRRLAAQLPLEAIVVETDAPDIAPEWAYKSRNTPDQVPRIGDVLAELRGIDAG
EHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCH
AVSLCTSANALAALPRLALSSA
HHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MWIDTHCHLDAAEFDADRDAVAHAARSAGVSRIVIPSVGRDNFTTVRELAQHTPGAVYAL
CEECCCCCCCHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEE
GIHPMYTPRARDEDLDLLRMEIEASLDDPRFVAIGEIGLDYFVPGLDEDRQQFFYQGQLK
ECCCCCCCCCCCCCHHHEEEEHHCCCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHCHHH
LAREFDLPVLCHVRKSQDRVLAGLRRFGVRRGIAHAFNGSFQQAEAYLAHGLHLGFGGNV
HHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEECCCCCE
TFTRALQIRRLAAQLPLEAIVVETDAPDIAPEWAYKSRNTPDQVPRIGDVLAELRGIDAG
EHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCH
AVSLCTSANALAALPRLALSSA
HHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]