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The map label for this gene is yhjC [C]

Identifier: 78066847

GI number: 78066847

Start: 2442924

End: 2443817

Strand: Reverse

Name: yhjC [C]

Synonym: Bcep18194_A5378

Alternate gene names: 78066847

Gene position: 2443817-2442924 (Counterclockwise)

Preceding gene: 78066849

Following gene: 78066846

Centisome position: 66.15

GC content: 63.31

Gene sequence:

>894_bases
GTGGATCCGTTTACCGATATCAGCACCTTTGTCCGTGCTGCCGAGGCCGGCAATTTCACGCGTGCGGCACGGTTGCTTCA
GCTTAGCCCTTCAGCCGTGAGCAAGGCGGTAGCACGCCTGGAAGCCGAACTGGGGGTTCGGCTGTTTCACCGTTCGCCGC
GGCAGATCACCTTGACCGGAGATGGCGAATTGTTCTTCGCGGTCTGCCGCCAGGGAATGACGGACATCGCGGACGCTCGA
AGCAGGCTTGCGGGTGCGTCGCAACCATGGCGGGGCAAGATGCGGCTCTGCGTCCCCGTGAGTTTCGGCCAGTATGTGCT
GGCGCCTGCGCTTGGTGATTGGCTGGGTGCTCATCCCGGGCTGGATATCGAACTCGCACTGACGGATCGTCACGTCGACA
TGACGGCCGAGCGTTTCGACCTGGCCGTGATGTTGGGGGAAGTGCCCGACTCCCGACTGGTGGCTCGCCCGTTGCCCGCT
CATCGCTTTGTGACGGTCGCTTCGCCGGCATACCTGCAGTCGCGGGGTGTGCCCGATACGCCGGACGACCTGGTCAACCA
TACCTGTCTGCGTTATGTGATGGTCAACAGCGGACAGTTCCGAGATTGGATGTTCGTTCGTGGCGGGGATCAGTACAGCC
ACTTTCCCGTGGGGCCGTTGGCCAGCGACCATGTGTCGGCGCTCCTGGCGCTGTCGGAAGCCGGGGGCGGTATCTTGCAA
GCCCCGCATTATGTCGTGGCGCCGTCGTTGGCCGCAGGGAGACTTGTTCCCGTCCTGAGCGACTTCAAGAGCATTGGCGC
CCCGTTGTCGGTGGTCTATGAGAAAGCGCGGCAAGCCTCCGCACGCACCAGGCTTGCCGCCGACTTCTTGTTGGCGCTTG
GCGAGCGGCTGTAG

Upstream 100 bases:

>100_bases
GACCCCCTCTTCAATCAATGAGGGTTCGACTATATGGGCGAACCCGTGTCACGATAAGGCGTTGAAATTCAGACTTACTG
TGAATTGAAGGAATGGTGGA

Downstream 100 bases:

>100_bases
GGCTGATGCGGGATTCAAAGACATCGCGCCGCTTGTCGCGATGGCGCAGGACGCATTGCTACTCGTACTCGACCCGCACA
CACCGCAGGATGTTGCGCGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDPFTDISTFVRAAEAGNFTRAARLLQLSPSAVSKAVARLEAELGVRLFHRSPRQITLTGDGELFFAVCRQGMTDIADAR
SRLAGASQPWRGKMRLCVPVSFGQYVLAPALGDWLGAHPGLDIELALTDRHVDMTAERFDLAVMLGEVPDSRLVARPLPA
HRFVTVASPAYLQSRGVPDTPDDLVNHTCLRYVMVNSGQFRDWMFVRGGDQYSHFPVGPLASDHVSALLALSEAGGGILQ
APHYVVAPSLAAGRLVPVLSDFKSIGAPLSVVYEKARQASARTRLAADFLLALGERL

Sequences:

>Translated_297_residues
MDPFTDISTFVRAAEAGNFTRAARLLQLSPSAVSKAVARLEAELGVRLFHRSPRQITLTGDGELFFAVCRQGMTDIADAR
SRLAGASQPWRGKMRLCVPVSFGQYVLAPALGDWLGAHPGLDIELALTDRHVDMTAERFDLAVMLGEVPDSRLVARPLPA
HRFVTVASPAYLQSRGVPDTPDDLVNHTCLRYVMVNSGQFRDWMFVRGGDQYSHFPVGPLASDHVSALLALSEAGGGILQ
APHYVVAPSLAAGRLVPVLSDFKSIGAPLSVVYEKARQASARTRLAADFLLALGERL
>Mature_297_residues
MDPFTDISTFVRAAEAGNFTRAARLLQLSPSAVSKAVARLEAELGVRLFHRSPRQITLTGDGELFFAVCRQGMTDIADAR
SRLAGASQPWRGKMRLCVPVSFGQYVLAPALGDWLGAHPGLDIELALTDRHVDMTAERFDLAVMLGEVPDSRLVARPLPA
HRFVTVASPAYLQSRGVPDTPDDLVNHTCLRYVMVNSGQFRDWMFVRGGDQYSHFPVGPLASDHVSALLALSEAGGGILQ
APHYVVAPSLAAGRLVPVLSDFKSIGAPLSVVYEKARQASARTRLAADFLLALGERL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=31, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=31.4685314685315, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=28.4280936454849, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787589, Length=262, Percent_Identity=30.1526717557252, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI87081978, Length=287, Percent_Identity=29.616724738676, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789440, Length=302, Percent_Identity=27.4834437086093, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1789173, Length=261, Percent_Identity=29.8850574712644, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=25.9515570934256, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786448, Length=203, Percent_Identity=31.0344827586207, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788706, Length=202, Percent_Identity=29.7029702970297, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI157672245, Length=155, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790011, Length=289, Percent_Identity=24.2214532871972, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790208, Length=124, Percent_Identity=31.4516129032258, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=23.469387755102, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32130; Mature: 32130

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPFTDISTFVRAAEAGNFTRAARLLQLSPSAVSKAVARLEAELGVRLFHRSPRQITLTG
CCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
DGELFFAVCRQGMTDIADARSRLAGASQPWRGKMRLCVPVSFGQYVLAPALGDWLGAHPG
CCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCC
LDIELALTDRHVDMTAERFDLAVMLGEVPDSRLVARPLPAHRFVTVASPAYLQSRGVPDT
CEEEEEEECCCCCCHHHHHHEEEEECCCCCCCEEECCCCCCEEEEECCCHHHHHCCCCCC
PDDLVNHTCLRYVMVNSGQFRDWMFVRGGDQYSHFPVGPLASDHVSALLALSEAGGGILQ
HHHHHHHHHHHHHEECCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
APHYVVAPSLAAGRLVPVLSDFKSIGAPLSVVYEKARQASARTRLAADFLLALGERL
CCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDPFTDISTFVRAAEAGNFTRAARLLQLSPSAVSKAVARLEAELGVRLFHRSPRQITLTG
CCCHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
DGELFFAVCRQGMTDIADARSRLAGASQPWRGKMRLCVPVSFGQYVLAPALGDWLGAHPG
CCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCC
LDIELALTDRHVDMTAERFDLAVMLGEVPDSRLVARPLPAHRFVTVASPAYLQSRGVPDT
CEEEEEEECCCCCCHHHHHHEEEEECCCCCCCEEECCCCCCEEEEECCCHHHHHCCCCCC
PDDLVNHTCLRYVMVNSGQFRDWMFVRGGDQYSHFPVGPLASDHVSALLALSEAGGGILQ
HHHHHHHHHHHHHEECCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
APHYVVAPSLAAGRLVPVLSDFKSIGAPLSVVYEKARQASARTRLAADFLLALGERL
CCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]