| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is yejA [C]
Identifier: 78066840
GI number: 78066840
Start: 2433756
End: 2435627
Strand: Reverse
Name: yejA [C]
Synonym: Bcep18194_A5371
Alternate gene names: 78066840
Gene position: 2435627-2433756 (Counterclockwise)
Preceding gene: 78066841
Following gene: 78066839
Centisome position: 65.93
GC content: 67.47
Gene sequence:
>1872_bases ATGACGAAGGGTTCGCCCCGGGCCGCCGGCACGCGTGTCCGCCGTGCCGTACGGGCCGCCGGCCGCACGGCAGCAGTGTT CGTGCTGCAGGCGGTGCTGGCCGCGACCGCTGCGCATGCGGTCTACGCCATTGCGCAGTACGGCGAGCCGAAGTATCCGC CGGGCTTCAAGCATTTCGACTACGTCAACCCCGACGCGCCGAAGGGCGGCACGCTGGTGCTCGCGAACCCGAACCGGCTG ACGTCGTTCGACAAGTTCAACCCGTTCACGATGCGCGGCAATCCCGCGCCGGGCATCGACATGCTGTTCGAGAGCCTCGC GACCGGCAGTTCGGACGAGCCGGCATCCGCATACGGGCTGCTTGCCGACGACATCGACATCGCGCCGGACCGCCGCTCGG TCACGTTCCACCTGAATCCGCGCGCGCGCTTCTCGAATGGCGACCGCGTCACCGCCGACGACGTCAAGTTCTCGTTCGAC ACGCTGAAGAGCAAGCAGGCCGCGCCGCAGTTCGGCGCGTATTTCGCGGAGCTCGCGAAGGCCGTGGTCGTCGACCCGGC CACCGTGCGCTTCGAGTTCCGCAGCGCGAACCGCGAACTGCCGCTGATCGCCGGCGGCGTGCCGGTGTTTTCCCGCAAGT GGGGATTGCGCGCGGACGGCTCGCGCATCCCGTTCGACCAGCTCGCGTTCGAGCAGCCGATCGGCAGCGGCCCGTACCTG ATCGACCATTACGACAACGGCCGGACGATCACTTACCGGCGTAACCCGGCGTACTGGGGCGCCGACCTGCCGGTGCGGGT GGGCACCAACAACTTCGAGCGGATCGTCTACAAGCTGTATGGCGACGGCGTCGCGCGGCTCGAGGCGTTCAAAGCCGGCG AATACGACGTGCTCGTCGAGTACATCGCGCGCAACTGGACACGCCGCGACGTCGGCAAGCGTTTCGACAACGGCGAGCTC GTCAAGCGCGAATTCCGCCAGCACAACGGCGCCGGCATGCAGGGCTTCTTCATGAACCTGCGCCGGCCGCTGTTTCGCGA CGTGCGCGTGCGTCAGGCGCTCGACCTCGCATTCGACTTCGAATGGCTGAACCGCCAGCTGTTCTACAGCGCCTACACGC GCATGGACAGCTACTTCGCCGACACCGACCTGCAGGCGACCGGCACGCCCGGCCCCGGCGAGCTGAAGCTGCTGGAGCCG CTGCGCGCGCAGCTCGACCCGGCCGTGTTCGGCCCGATGGTCACGCAGCCGAACACGAACCCGCCGGGCTCGCTGCGCGC GAACCTGCTGAAGGCGCGCGCACTGCTCGCGCAGGCCGGCTGGACCTATCGCGACGGCGCGCTGCGCAATGAGAAGGGCG AGCCGTTTACGTTCGAGATCCTCGACGATTCGGGCGCGGCGATGGAAGGGATCGTGGCTGCGTACCAGCGCAATCTGGCG AAGCTCGGCATCGACGCACGTTTTCGCACGGCCGATTACGCGCTCCTGCAAAAGCGTCTCGACGCGTTCGACTACGACAT GACGACGATCCGTTTGCCGGGCGTGCAGGTGCCGGGTGCCGAGCAATACTCGCGTTATGCGAGCAAGTTCGCCGACGAGC CGGGCTCCGACAACTTCATCGGACTGAAGTCGCCGGCCGTCGACGCATTGCTGCACGCACTCGGCACCGCGCAGACGCGC GACGACCTGCTCGATGCGACGCACGCGCTCGACCGCGTGCTGATGCACGGCTACTACGCAGTCCCGCAGTGGTACAGCAC GACGCACCGGGTCGCGTACAAGCGCACGCTTGCCTATCCGCAGACGCTGCCGCTGTACTATTCGGCCGAGGGCTGGGTCG TGTCGACCTGGTGGGCGAAGCCCGATCACTGA
Upstream 100 bases:
>100_bases CGTGAAGAAACCGCCCGCGTGGCGGTTTTCTTTTGGCTCGCCGGCTTGAGTGGGTAGAATCGTCCCTCGTTACTACCCTC ATTCGACCGACAAGGCCTCT
Downstream 100 bases:
>100_bases GCCACGCCGCCCCTACGTCCAACCCCGCCTACCGAACGCGAGTCGACGCCCTATGTGGAGCTACATCCTCAAACGCCTGC TGCTGATGATCCCGACGCTC
Product: ABC transporter, periplasmic ligand binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 623; Mature: 622
Protein sequence:
>623_residues MTKGSPRAAGTRVRRAVRAAGRTAAVFVLQAVLAATAAHAVYAIAQYGEPKYPPGFKHFDYVNPDAPKGGTLVLANPNRL TSFDKFNPFTMRGNPAPGIDMLFESLATGSSDEPASAYGLLADDIDIAPDRRSVTFHLNPRARFSNGDRVTADDVKFSFD TLKSKQAAPQFGAYFAELAKAVVVDPATVRFEFRSANRELPLIAGGVPVFSRKWGLRADGSRIPFDQLAFEQPIGSGPYL IDHYDNGRTITYRRNPAYWGADLPVRVGTNNFERIVYKLYGDGVARLEAFKAGEYDVLVEYIARNWTRRDVGKRFDNGEL VKREFRQHNGAGMQGFFMNLRRPLFRDVRVRQALDLAFDFEWLNRQLFYSAYTRMDSYFADTDLQATGTPGPGELKLLEP LRAQLDPAVFGPMVTQPNTNPPGSLRANLLKARALLAQAGWTYRDGALRNEKGEPFTFEILDDSGAAMEGIVAAYQRNLA KLGIDARFRTADYALLQKRLDAFDYDMTTIRLPGVQVPGAEQYSRYASKFADEPGSDNFIGLKSPAVDALLHALGTAQTR DDLLDATHALDRVLMHGYYAVPQWYSTTHRVAYKRTLAYPQTLPLYYSAEGWVVSTWWAKPDH
Sequences:
>Translated_623_residues MTKGSPRAAGTRVRRAVRAAGRTAAVFVLQAVLAATAAHAVYAIAQYGEPKYPPGFKHFDYVNPDAPKGGTLVLANPNRL TSFDKFNPFTMRGNPAPGIDMLFESLATGSSDEPASAYGLLADDIDIAPDRRSVTFHLNPRARFSNGDRVTADDVKFSFD TLKSKQAAPQFGAYFAELAKAVVVDPATVRFEFRSANRELPLIAGGVPVFSRKWGLRADGSRIPFDQLAFEQPIGSGPYL IDHYDNGRTITYRRNPAYWGADLPVRVGTNNFERIVYKLYGDGVARLEAFKAGEYDVLVEYIARNWTRRDVGKRFDNGEL VKREFRQHNGAGMQGFFMNLRRPLFRDVRVRQALDLAFDFEWLNRQLFYSAYTRMDSYFADTDLQATGTPGPGELKLLEP LRAQLDPAVFGPMVTQPNTNPPGSLRANLLKARALLAQAGWTYRDGALRNEKGEPFTFEILDDSGAAMEGIVAAYQRNLA KLGIDARFRTADYALLQKRLDAFDYDMTTIRLPGVQVPGAEQYSRYASKFADEPGSDNFIGLKSPAVDALLHALGTAQTR DDLLDATHALDRVLMHGYYAVPQWYSTTHRVAYKRTLAYPQTLPLYYSAEGWVVSTWWAKPDH >Mature_622_residues TKGSPRAAGTRVRRAVRAAGRTAAVFVLQAVLAATAAHAVYAIAQYGEPKYPPGFKHFDYVNPDAPKGGTLVLANPNRLT SFDKFNPFTMRGNPAPGIDMLFESLATGSSDEPASAYGLLADDIDIAPDRRSVTFHLNPRARFSNGDRVTADDVKFSFDT LKSKQAAPQFGAYFAELAKAVVVDPATVRFEFRSANRELPLIAGGVPVFSRKWGLRADGSRIPFDQLAFEQPIGSGPYLI DHYDNGRTITYRRNPAYWGADLPVRVGTNNFERIVYKLYGDGVARLEAFKAGEYDVLVEYIARNWTRRDVGKRFDNGELV KREFRQHNGAGMQGFFMNLRRPLFRDVRVRQALDLAFDFEWLNRQLFYSAYTRMDSYFADTDLQATGTPGPGELKLLEPL RAQLDPAVFGPMVTQPNTNPPGSLRANLLKARALLAQAGWTYRDGALRNEKGEPFTFEILDDSGAAMEGIVAAYQRNLAK LGIDARFRTADYALLQKRLDAFDYDMTTIRLPGVQVPGAEQYSRYASKFADEPGSDNFIGLKSPAVDALLHALGTAQTRD DLLDATHALDRVLMHGYYAVPQWYSTTHRVAYKRTLAYPQTLPLYYSAEGWVVSTWWAKPDH
Specific function: Unknown
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=589, Percent_Identity=37.0118845500849, Blast_Score=361, Evalue=1e-101,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 69471; Mature: 69340
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: PS01310 FXYD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKGSPRAAGTRVRRAVRAAGRTAAVFVLQAVLAATAAHAVYAIAQYGEPKYPPGFKHFD CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC YVNPDAPKGGTLVLANPNRLTSFDKFNPFTMRGNPAPGIDMLFESLATGSSDEPASAYGL CCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCHHHCE LADDIDIAPDRRSVTFHLNPRARFSNGDRVTADDVKFSFDTLKSKQAAPQFGAYFAELAK EECCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCEEHHHHHHHHCCCCHHHHHHHHHHH AVVVDPATVRFEFRSANRELPLIAGGVPVFSRKWGLRADGSRIPFDQLAFEQPIGSGPYL HHEECCCEEEEEEECCCCCCCEEECCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEE IDHYDNGRTITYRRNPAYWGADLPVRVGTNNFERIVYKLYGDGVARLEAFKAGEYDVLVE EEEECCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHHH YIARNWTRRDVGKRFDNGELVKREFRQHNGAGMQGFFMNLRRPLFRDVRVRQALDLAFDF HHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EWLNRQLFYSAYTRMDSYFADTDLQATGTPGPGELKLLEPLRAQLDPAVFGPMVTQPNTN HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCC PPGSLRANLLKARALLAQAGWTYRDGALRNEKGEPFTFEILDDSGAAMEGIVAAYQRNLA CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH KLGIDARFRTADYALLQKRLDAFDYDMTTIRLPGVQVPGAEQYSRYASKFADEPGSDNFI HHCCCCEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEE GLKSPAVDALLHALGTAQTRDDLLDATHALDRVLMHGYYAVPQWYSTTHRVAYKRTLAYP ECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHCCC QTLPLYYSAEGWVVSTWWAKPDH CCCCEEECCCCCEEEEECCCCCC >Mature Secondary Structure TKGSPRAAGTRVRRAVRAAGRTAAVFVLQAVLAATAAHAVYAIAQYGEPKYPPGFKHFD CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC YVNPDAPKGGTLVLANPNRLTSFDKFNPFTMRGNPAPGIDMLFESLATGSSDEPASAYGL CCCCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCCCCCHHHCE LADDIDIAPDRRSVTFHLNPRARFSNGDRVTADDVKFSFDTLKSKQAAPQFGAYFAELAK EECCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCEEHHHHHHHHCCCCHHHHHHHHHHH AVVVDPATVRFEFRSANRELPLIAGGVPVFSRKWGLRADGSRIPFDQLAFEQPIGSGPYL HHEECCCEEEEEEECCCCCCCEEECCCCHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEE IDHYDNGRTITYRRNPAYWGADLPVRVGTNNFERIVYKLYGDGVARLEAFKAGEYDVLVE EEEECCCCEEEEECCCCCCCCCCEEEECCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHHH YIARNWTRRDVGKRFDNGELVKREFRQHNGAGMQGFFMNLRRPLFRDVRVRQALDLAFDF HHHCCCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EWLNRQLFYSAYTRMDSYFADTDLQATGTPGPGELKLLEPLRAQLDPAVFGPMVTQPNTN HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCC PPGSLRANLLKARALLAQAGWTYRDGALRNEKGEPFTFEILDDSGAAMEGIVAAYQRNLA CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH KLGIDARFRTADYALLQKRLDAFDYDMTTIRLPGVQVPGAEQYSRYASKFADEPGSDNFI HHCCCCEECHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEE GLKSPAVDALLHALGTAQTRDDLLDATHALDRVLMHGYYAVPQWYSTTHRVAYKRTLAYP ECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHCCC QTLPLYYSAEGWVVSTWWAKPDH CCCCEEECCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA