Click here to switch to the map view.

The map label for this gene is ydhM [C]

Identifier: 78066763

GI number: 78066763

Start: 2347526

End: 2348092

Strand: Reverse

Name: ydhM [C]

Synonym: Bcep18194_A5294

Alternate gene names: 78066763

Gene position: 2348092-2347526 (Counterclockwise)

Preceding gene: 78066766

Following gene: 78066754

Centisome position: 63.56

GC content: 67.72

Gene sequence:

>567_bases
ATGGCGATGACGATGAGCACACTGACGCGAAACGACTGGATTGCAGCGGGCTTCGACGCCCTCGACGGGGAAGGGTATGC
GGGTATTTCGGCCGAGAGTCTCGCGCGACGGCTGAACGTGACCCGCGGATCGTTCTATCACCACTTCCGCAATCGCGAGG
ACTTCGTCACGACCTTGCTGACCGCGTGGGAAGACGACTACACCGCGCGCATGCTTGCGTATGCGGCGGGCGGCCGCGGT
GCCGGCGACACGCTGGCGCGCTATCTGCGCATTGCGGCCGAGAAGCGGCCCGGGCGTGAAATCGCGATCCGCGCGTGGGC
GCTGCACGATCCGCTCGTCGCGGAATTCCAGCAGCGTGTCGACGCGGCGCGGCTCGCATTTGCGATCGAGACGTCGCGCC
GGCTGGTGCGCACGTCGGGCGAGGCGGAGATCGTCGGGCAGGCCGTGCACTTGTGCCTGATCGGCGGACAACAGGCCGGG
CTGCGGCGCGACGCCGGCCGGTTCAACGGCTTCATGCAGCGCGCGGTTGCAATGGCCGAACGTGTGCTGCCGATGCGTCG
CACATGA

Upstream 100 bases:

>100_bases
TCTTTCAAGGTGGACTCCATGCGTAGTGGCGCGCAGCGGAAGCGGCGGCCGTGATAGAGTCCGCAGCCTATCTGTCCATG
CCGCACCATACACAGCCTGT

Downstream 100 bases:

>100_bases
CGTGTCACGTGGCCGCGTACCGGTGTGCATGCTGCATGCGTGGAGCGGGCCCGGTATCAGGCAGCCGAGTTCGCGTGCCC
GGTGCGCATGACGTGGAGCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcriptional Regulatory Protein

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MAMTMSTLTRNDWIAAGFDALDGEGYAGISAESLARRLNVTRGSFYHHFRNREDFVTTLLTAWEDDYTARMLAYAAGGRG
AGDTLARYLRIAAEKRPGREIAIRAWALHDPLVAEFQQRVDAARLAFAIETSRRLVRTSGEAEIVGQAVHLCLIGGQQAG
LRRDAGRFNGFMQRAVAMAERVLPMRRT

Sequences:

>Translated_188_residues
MAMTMSTLTRNDWIAAGFDALDGEGYAGISAESLARRLNVTRGSFYHHFRNREDFVTTLLTAWEDDYTARMLAYAAGGRG
AGDTLARYLRIAAEKRPGREIAIRAWALHDPLVAEFQQRVDAARLAFAIETSRRLVRTSGEAEIVGQAVHLCLIGGQQAG
LRRDAGRFNGFMQRAVAMAERVLPMRRT
>Mature_187_residues
AMTMSTLTRNDWIAAGFDALDGEGYAGISAESLARRLNVTRGSFYHHFRNREDFVTTLLTAWEDDYTARMLAYAAGGRGA
GDTLARYLRIAAEKRPGREIAIRAWALHDPLVAEFQQRVDAARLAFAIETSRRLVRTSGEAEIVGQAVHLCLIGGQQAGL
RRDAGRFNGFMQRAVAMAERVLPMRRT

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20891; Mature: 20760

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMTMSTLTRNDWIAAGFDALDGEGYAGISAESLARRLNVTRGSFYHHFRNREDFVTTLL
CCCCHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCHHHHHHHHH
TAWEDDYTARMLAYAAGGRGAGDTLARYLRIAAEKRPGREIAIRAWALHDPLVAEFQQRV
HHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHH
DAARLAFAIETSRRLVRTSGEAEIVGQAVHLCLIGGQQAGLRRDAGRFNGFMQRAVAMAE
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH
RVLPMRRT
HHCCCCCC
>Mature Secondary Structure 
AMTMSTLTRNDWIAAGFDALDGEGYAGISAESLARRLNVTRGSFYHHFRNREDFVTTLL
CCCHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCHHHHHHHHH
TAWEDDYTARMLAYAAGGRGAGDTLARYLRIAAEKRPGREIAIRAWALHDPLVAEFQQRV
HHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHH
DAARLAFAIETSRRLVRTSGEAEIVGQAVHLCLIGGQQAGLRRDAGRFNGFMQRAVAMAE
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHH
RVLPMRRT
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA