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The map label for this gene is nodB [H]

Identifier: 78066529

GI number: 78066529

Start: 2098181

End: 2098765

Strand: Direct

Name: nodB [H]

Synonym: Bcep18194_A5060

Alternate gene names: 78066529

Gene position: 2098181-2098765 (Clockwise)

Preceding gene: 78066528

Following gene: 78066531

Centisome position: 56.8

GC content: 67.69

Gene sequence:

>585_bases
ATGTCCATTCGCCTCAGTTTCGACGACGGCCCCGGCCCGTCGACGCCCCTCTTGCTCGATGTCCTGCACGCCGCGTCCTG
CCAGGCGACCTTCTTCCTGCTCGGCCAGCATCTCGCCGGCGGGCTCGACGTCGCAACAAGAATGGCGAGCGAAGGCCATC
GACTCGGCAATCACACCCATTCGCACGCGAAGCCCGGCGCACTGGCGGACGATGCGCTGATCGACGAGATCGAGACGACC
GACGCGCTGATCCGCGAAGCCTATCGCCGCGCCGGCGTTCCCGTGCCGGACACGATTCCTTTGCGCCTGCCTTACGGATT
GATGCCGCAGGACAATCGCGCCGGCGTGCTCGCGCGGCTGCAGCGCGAACACACGGGCTGGACCGCGATACTCGACGACT
GGCAGCGGCCGGCGCCTTCGCCGCAGGCACTGTTCGACGCGATGTGTGCACATGTCGACGCCCGCGCGGCGCGCCAACAA
GACGTGCTGTTCTGCATGCACGACGGATCGCGGCACGGCGACGCGCGGCCCAATACGGTCGAAGCGGTGCGCCTGTTCCT
GCTGTCCCTGAATCGGCAGCGCTGA

Upstream 100 bases:

>100_bases
GAGCCGCTCCAGTAGCCGGCCGAAGGATGCGCCTGCCGCCGCTCGCCGCGACTTGCGCTATCGTTCCTCCGGTACACCTT
GAACGGCGCACCCACCCGCG

Downstream 100 bases:

>100_bases
CGCAGCAGCCGGCTAGCGCCCCGGCACCGCGCCATCCAGCAACTGCCACCAGCCGCCGAGAAAGCCGATGCCCGGCCCCG
GTGTCCACAGGCCGCGCTGG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MSIRLSFDDGPGPSTPLLLDVLHAASCQATFFLLGQHLAGGLDVATRMASEGHRLGNHTHSHAKPGALADDALIDEIETT
DALIREAYRRAGVPVPDTIPLRLPYGLMPQDNRAGVLARLQREHTGWTAILDDWQRPAPSPQALFDAMCAHVDARAARQQ
DVLFCMHDGSRHGDARPNTVEAVRLFLLSLNRQR

Sequences:

>Translated_194_residues
MSIRLSFDDGPGPSTPLLLDVLHAASCQATFFLLGQHLAGGLDVATRMASEGHRLGNHTHSHAKPGALADDALIDEIETT
DALIREAYRRAGVPVPDTIPLRLPYGLMPQDNRAGVLARLQREHTGWTAILDDWQRPAPSPQALFDAMCAHVDARAARQQ
DVLFCMHDGSRHGDARPNTVEAVRLFLLSLNRQR
>Mature_193_residues
SIRLSFDDGPGPSTPLLLDVLHAASCQATFFLLGQHLAGGLDVATRMASEGHRLGNHTHSHAKPGALADDALIDEIETTD
ALIREAYRRAGVPVPDTIPLRLPYGLMPQDNRAGVLARLQREHTGWTAILDDWQRPAPSPQALFDAMCAHVDARAARQQD
VLFCMHDGSRHGDARPNTVEAVRLFLLSLNRQR

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 21250; Mature: 21119

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRLSFDDGPGPSTPLLLDVLHAASCQATFFLLGQHLAGGLDVATRMASEGHRLGNHTH
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHCCCCCC
SHAKPGALADDALIDEIETTDALIREAYRRAGVPVPDTIPLRLPYGLMPQDNRAGVLARL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
QREHTGWTAILDDWQRPAPSPQALFDAMCAHVDARAARQQDVLFCMHDGSRHGDARPNTV
HHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHH
EAVRLFLLSLNRQR
HHHHHHHHHHCCCC
>Mature Secondary Structure 
SIRLSFDDGPGPSTPLLLDVLHAASCQATFFLLGQHLAGGLDVATRMASEGHRLGNHTH
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHCCCCCC
SHAKPGALADDALIDEIETTDALIREAYRRAGVPVPDTIPLRLPYGLMPQDNRAGVLARL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
QREHTGWTAILDDWQRPAPSPQALFDAMCAHVDARAARQQDVLFCMHDGSRHGDARPNTV
HHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHH
EAVRLFLLSLNRQR
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3960737 [H]