Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 78066217

GI number: 78066217

Start: 1738677

End: 1739696

Strand: Direct

Name: rbsC [H]

Synonym: Bcep18194_A4747

Alternate gene names: 78066217

Gene position: 1738677-1739696 (Clockwise)

Preceding gene: 78066216

Following gene: 78066218

Centisome position: 47.07

GC content: 67.45

Gene sequence:

>1020_bases
ATGACCCAGCCTCCCGTAACCCCGACCGACGCAGGCGCGCAGCAGGACGTGACGGGGCGCCGCGCGCGCACGCTGTCCGG
CACGCGGCTCGGCCTGTCGAACTACCTCGGGCTCGCCGGCGCGCTCGCAGCGATGATTGCGCTGTTTTCGGTGCTGAGCT
CGCACTTCCTGACCTACGACACGTTCAGCACGATCGCGAACCAGATCCCCGATCTCGTCGTGATGTCGGTCGGGATGACC
TTCGTGCTGATCATCGCCGGGATCGACCTGTCGGTCGGCTCGGTACTCGCGCTCGCCGCGTCGATGGTCAGCGTCGCCGC
GCTGAAATGGCAGTGGGGGCCGCTGCCGGCCGCGCTGATCGGCATCGCGGTCGCGACCATGACGGGCGCGCTGACGGGCG
CGGTCACGGTCGGCTGGCGGATCCCGTCGTTCATCGTGTCGCTCGGCGTGCTGGAGGCCGCGCGCGGCCTCGCGTACCAG
CTGACGAATTCGCGCACGGCCTACATCGGCGACGCGTTCGATTTCCTGTCGAACCCGATCGCGCTCGGCATCTCGCCGGC
ATTCCTGATCGCGGTCGCGGTGATGATCGCGGCCCAGTTCGTGCTGACACGGACCGTGTTCGGACGCTATCTCGTCGGGA
TCGGCACGAACGAAGAAGCCGTCCGACTTGCGGGGGTTAACCCGAGGCCGTATAAAATTCTCGTATTCGCATCGATGGGC
GCACTCGCAGGTCTTGCGTCGCTGTTCCAGATTTCGCGGCTCGAGGCGGCCGACCCGAATGCGGGCGTCGGCCTCGAACT
GCAGGTGATCGCCGCCGTCGTGATTGGCGGCACGAGCCTGATGGGCGGGCGCGGCTCGGTGATCAGCACGTTCTTCGGCG
TGTTGATCATCTCCGTGCTGGCCGCGGGGCTGGCGCAGATCGGCGCGAACGAGCCGACGAAACGGATCATCACCGGCGCG
GTGATCGTGGTGGCGGTCGTGCTCGATACGTATCGCAGCCGGCGCACACGCGTGCGGTAG

Upstream 100 bases:

>100_bases
CCGGCTTCGGCCGCGAGACGCCGCCGGGCGGCGCGCAGCATCCGGACGCGGGGCAGGCGCCAGGCGCCGCTCCGGGCACT
TCGACGACAGGACGACCGCA

Downstream 100 bases:

>100_bases
AAAGACAGACAGAACAGACCAGAGAGAAACGGGAAATGGCGACGATCAAGGATGTGGCGGCCATGGCGGGCGTGTCGTTT
ACGACCGTCTCGCACGTGGT

Product: ABC sugar transporter, inner membrane subunit

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MTQPPVTPTDAGAQQDVTGRRARTLSGTRLGLSNYLGLAGALAAMIALFSVLSSHFLTYDTFSTIANQIPDLVVMSVGMT
FVLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALIGIAVATMTGALTGAVTVGWRIPSFIVSLGVLEAARGLAYQ
LTNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFASMG
ALAGLASLFQISRLEAADPNAGVGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRIITGA
VIVVAVVLDTYRSRRTRVR

Sequences:

>Translated_339_residues
MTQPPVTPTDAGAQQDVTGRRARTLSGTRLGLSNYLGLAGALAAMIALFSVLSSHFLTYDTFSTIANQIPDLVVMSVGMT
FVLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALIGIAVATMTGALTGAVTVGWRIPSFIVSLGVLEAARGLAYQ
LTNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFASMG
ALAGLASLFQISRLEAADPNAGVGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRIITGA
VIVVAVVLDTYRSRRTRVR
>Mature_338_residues
TQPPVTPTDAGAQQDVTGRRARTLSGTRLGLSNYLGLAGALAAMIALFSVLSSHFLTYDTFSTIANQIPDLVVMSVGMTF
VLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALIGIAVATMTGALTGAVTVGWRIPSFIVSLGVLEAARGLAYQL
TNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFASMGA
LAGLASLFQISRLEAADPNAGVGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRIITGAV
IVVAVVLDTYRSRRTRVR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=337, Percent_Identity=35.3115727002967, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=31.3915857605178, Blast_Score=131, Evalue=8e-32,
Organism=Escherichia coli, GI1790524, Length=297, Percent_Identity=32.6599326599327, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI145693152, Length=273, Percent_Identity=30.4029304029304, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI87082395, Length=251, Percent_Identity=33.4661354581673, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=43.0656934306569, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI145693214, Length=251, Percent_Identity=31.4741035856574, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787793, Length=283, Percent_Identity=27.5618374558304, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788471, Length=284, Percent_Identity=29.9295774647887, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787794, Length=312, Percent_Identity=23.7179487179487, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35064; Mature: 34933

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPPVTPTDAGAQQDVTGRRARTLSGTRLGLSNYLGLAGALAAMIALFSVLSSHFLTYD
CCCCCCCCCCCCCCCCCCCCHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFSTIANQIPDLVVMSVGMTFVLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALI
HHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GIAVATMTGALTGAVTVGWRIPSFIVSLGVLEAARGLAYQLTNSRTAYIGDAFDFLSNPI
HHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHCCCC
ALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFASMG
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCEEEEEEEHHH
ALAGLASLFQISRLEAADPNAGVGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVL
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
AAGLAQIGANEPTKRIITGAVIVVAVVLDTYRSRRTRVR
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TQPPVTPTDAGAQQDVTGRRARTLSGTRLGLSNYLGLAGALAAMIALFSVLSSHFLTYD
CCCCCCCCCCCCCCCCCCCHHHCCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFSTIANQIPDLVVMSVGMTFVLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALI
HHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GIAVATMTGALTGAVTVGWRIPSFIVSLGVLEAARGLAYQLTNSRTAYIGDAFDFLSNPI
HHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHCCCC
ALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFASMG
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCEEEEEEEHHH
ALAGLASLFQISRLEAADPNAGVGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVL
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
AAGLAQIGANEPTKRIITGAVIVVAVVLDTYRSRRTRVR
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]