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The map label for this gene is yecS [H]

Identifier: 78066164

GI number: 78066164

Start: 1690663

End: 1691355

Strand: Reverse

Name: yecS [H]

Synonym: Bcep18194_A4694

Alternate gene names: 78066164

Gene position: 1691355-1690663 (Counterclockwise)

Preceding gene: 78066165

Following gene: 78066155

Centisome position: 45.78

GC content: 66.67

Gene sequence:

>693_bases
ATGTCGACAACGTCCCTGCTCGTCCAATCGCTGCCGGTGCTCGCCCAGGGCGCCGTTCTGACCGTCAAGTTCGCCGTGCT
GTCGATGGTGTTCGGCCTGCTTGGCGCCGTCGTGCTCGCGATGATGGGCATCCGGCAAAGCGAAGCACTCGACGGCTTCG
AACGCATCTGGGTCAACGCGCTCGCGTGGCTGGCACGCGCGTACGTGAGCCTGATGCGCGGCACGCCGCTGCTCGTGCAG
ATCTTCGTCATCTATTACGGGCTGCCGAGCCTCGGCATCTCACTCGACCCGACGCCCGCCGGCGTCATCGCGCTGTCGGC
GAACGTCGCCGCCTACATGTCGGAAAGCATGCGCGGCGCGATCAACGGGATCGCGCGCGGCCAATGGCTCGCCGCGTATA
GCCTCGGGCTGTCGTGGGGGCAGACGCTGCGCTACGTGATCGGCCCGCAGGCGCTGCGCATCGCGGTGCCGAGCCTGTCG
AACAGCCTGATCAGCCTGATCAAGGACACCTCGCTCGTGTCCGTGATCACCGTGACCGAACTGCTGCGCAGCGCGCAGGA
AGTGATCGCGGCGACCTATCAGCCGCTGCCGCTCTATCTCGCCGCCGCGGCCGTGTACTGGATCCTGTGCCAGATCCTCG
AATGGGTGCAGCGCTGGTACGAAAAGCGCCTGTCGCTGCCGTCGCGGCACTGA

Upstream 100 bases:

>100_bases
ACGGCGGGCCGGAAAGGGCGGCATCCGTAACGATGCCGCCCTTTGTTTTATTCGTCCGGTTTATGATTGCGCTTTCGCGC
ACACATTCGATTCGTATTCC

Downstream 100 bases:

>100_bases
GCGCACGCCGTCCGCCGGGCCGCTCGCGCGCGCCCGGCACCCCGCTTCCCGCTTACTCCCCCGAATAACGCACGCCGAGC
GCCGCTCGCGCGGCATCGGT

Product: ABC polar amino acid transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSTTSLLVQSLPVLAQGAVLTVKFAVLSMVFGLLGAVVLAMMGIRQSEALDGFERIWVNALAWLARAYVSLMRGTPLLVQ
IFVIYYGLPSLGISLDPTPAGVIALSANVAAYMSESMRGAINGIARGQWLAAYSLGLSWGQTLRYVIGPQALRIAVPSLS
NSLISLIKDTSLVSVITVTELLRSAQEVIAATYQPLPLYLAAAAVYWILCQILEWVQRWYEKRLSLPSRH

Sequences:

>Translated_230_residues
MSTTSLLVQSLPVLAQGAVLTVKFAVLSMVFGLLGAVVLAMMGIRQSEALDGFERIWVNALAWLARAYVSLMRGTPLLVQ
IFVIYYGLPSLGISLDPTPAGVIALSANVAAYMSESMRGAINGIARGQWLAAYSLGLSWGQTLRYVIGPQALRIAVPSLS
NSLISLIKDTSLVSVITVTELLRSAQEVIAATYQPLPLYLAAAAVYWILCQILEWVQRWYEKRLSLPSRH
>Mature_229_residues
STTSLLVQSLPVLAQGAVLTVKFAVLSMVFGLLGAVVLAMMGIRQSEALDGFERIWVNALAWLARAYVSLMRGTPLLVQI
FVIYYGLPSLGISLDPTPAGVIALSANVAAYMSESMRGAINGIARGQWLAAYSLGLSWGQTLRYVIGPQALRIAVPSLSN
SLISLIKDTSLVSVITVTELLRSAQEVIAATYQPLPLYLAAAAVYWILCQILEWVQRWYEKRLSLPSRH

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=229, Percent_Identity=45.4148471615721, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1787030, Length=220, Percent_Identity=37.7272727272727, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1787087, Length=245, Percent_Identity=30.2040816326531, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787086, Length=228, Percent_Identity=31.5789473684211, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788646, Length=234, Percent_Identity=28.6324786324786, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788645, Length=220, Percent_Identity=33.6363636363636, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1786873, Length=214, Percent_Identity=33.6448598130841, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082239, Length=167, Percent_Identity=34.7305389221557, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1786874, Length=182, Percent_Identity=28.021978021978, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI48994930, Length=213, Percent_Identity=29.1079812206573, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24997; Mature: 24866

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTTSLLVQSLPVLAQGAVLTVKFAVLSMVFGLLGAVVLAMMGIRQSEALDGFERIWVNA
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LAWLARAYVSLMRGTPLLVQIFVIYYGLPSLGISLDPTPAGVIALSANVAAYMSESMRGA
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHH
INGIARGQWLAAYSLGLSWGQTLRYVIGPQALRIAVPSLSNSLISLIKDTSLVSVITVTE
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LLRSAQEVIAATYQPLPLYLAAAAVYWILCQILEWVQRWYEKRLSLPSRH
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
STTSLLVQSLPVLAQGAVLTVKFAVLSMVFGLLGAVVLAMMGIRQSEALDGFERIWVNA
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LAWLARAYVSLMRGTPLLVQIFVIYYGLPSLGISLDPTPAGVIALSANVAAYMSESMRGA
HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHH
INGIARGQWLAAYSLGLSWGQTLRYVIGPQALRIAVPSLSNSLISLIKDTSLVSVITVTE
HHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LLRSAQEVIAATYQPLPLYLAAAAVYWILCQILEWVQRWYEKRLSLPSRH
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]