Click here to switch to the map view.

The map label for this gene is stc [H]

Identifier: 78066139

GI number: 78066139

Start: 1660719

End: 1662038

Strand: Direct

Name: stc [H]

Synonym: Bcep18194_A4669

Alternate gene names: 78066139

Gene position: 1660719-1662038 (Clockwise)

Preceding gene: 78066138

Following gene: 78066140

Centisome position: 44.96

GC content: 64.09

Gene sequence:

>1320_bases
TTGCCCAAACGGTTTACTGAAGAAGATGAGAAACACACCCGCAATCGAAGAGCTCGACCTGTACGTCTGGGAAGGCAAGG
CGGACATCGTCGACCGCGTCGCCCGGTGCATGGCGAGCTTCGACGTCGAAGTGATCCGCGCCGACAACGCGGAGGTCTCG
GCCGAGCGCGCCGCATTGCGACCATCGCTGGCGATCACGACGCGTCGCAGTATCCGCCCGAGTATTCGCATATCCTGCCG
CTCGACTTCACGTGCGCCGAACTGCGCGGCATGATCGGCAAGCTCGTCACGCAGCTGCGGGCGCATACGGCCGAAACGTC
GCATCCGACCGAACTCGTCGCGCACTCGGAATCGATGCAGGCCCTGCTGCACGAAGTCGATACGTTCGCCGACTGCGACA
CCAACGTGCTGCTGCACGGCGAAACCGGCGTCGGCAAGGAGCGCATCGCGCAACTGCTGCACGAAAAACATTCGCGCTAC
CGGCACGGCGAATTCGTGCCGGTGAACTGCGGCGCGATTCCCGACGGCCTGTTCGAATCGCTGTTCTTCGGTCATGCGAA
GGGATCGTTCACGGGCGCGGTTGTTGCGCATAAAGGCTATTTCGAACAGGCGGGCGGCGGCACGCTGTTCCTCGACGAAG
TCGGCGATCTGCCGCTGTATCAGCAGGTCAAGCTGCTGCGCGTGCTCGAGGATGGCGCGGTGCTGCGCGTCGGTGCGTCG
GCGCCGGTCAAGGTCGATTTCCGCCTGGTGGCGGCAAGCAACAAGAAGCTGCCGCAGCTCGTGAAGGATGGCCTGTTCCG
CGCCGATCTCTATTACCGGCTCGCGGTGATCGAGCTGAGCATTCCGTCGCTGGAAGAGCGCGGCGCCGTCGACAAGATCG
CGTTGTTCAAGTCGTTCGTCGCGCAGGTCGTCGGCGAGGAGCGGCTCGCTCAGTTGTCCGATCTGCCGTACTGGCTGACG
GATTCGGTCGCGGACAGCTATTTCCCCGGCAACGTGCGCGAACTGCGCAACCTTGCCGAGCGTGTCGGCGTGACGGTGCG
GCAGACGGGCGGGTGGGATGCCGCGCGATTGCAGCGGCTGATCGCGCATGCGCGCAATTCGGCGCAGCCGGTGCCGGCGG
AGAGCGCGGCCGAGGTGTTCGTCGACCGCAGCAAGTGGGACATGAACGAGCGCAACCGCGTCATTGCGGCGCTCGACGCA
AACGGCTGGCGGCGTCAGGATACGGCGCAGCAGCTCGGCATCAGCCGCAAGGTACTGTGGGAAAAAATGCGCAAATACCA
GATCTTCGACGAGGAGCCCGAGACCCGCGAAAGTGAGTAA

Upstream 100 bases:

>100_bases
CTCCTGTCGAGCCTCGACGCAGTTCTCGTTCCGTTGCTGAATCTCCTCGGAGTCCAGGTCGGCGCGGCGACGGTCCATCA
GATCTCGCTCAGTTGCGGGG

Downstream 100 bases:

>100_bases
TTAATGAGATAAAATCGCGCTGAATTACAACGACTCGGGCGGGAATAGAACTTCATGAGCCATATGACGGGGTTGGGAAG
GGCGTGCGTATTGTTCGCCC

Product: sigma-54 dependent trancsriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MPKRFTEEDEKHTRNRRARPVRLGRQGGHRRPRRPVHGELRRRSDPRRQRGGLGRARRIATIAGDHDASQYPPEYSHILP
LDFTCAELRGMIGKLVTQLRAHTAETSHPTELVAHSESMQALLHEVDTFADCDTNVLLHGETGVGKERIAQLLHEKHSRY
RHGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVVAHKGYFEQAGGGTLFLDEVGDLPLYQQVKLLRVLEDGAVLRVGAS
APVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGAVDKIALFKSFVAQVVGEERLAQLSDLPYWLT
DSVADSYFPGNVRELRNLAERVGVTVRQTGGWDAARLQRLIAHARNSAQPVPAESAAEVFVDRSKWDMNERNRVIAALDA
NGWRRQDTAQQLGISRKVLWEKMRKYQIFDEEPETRESE

Sequences:

>Translated_439_residues
MPKRFTEEDEKHTRNRRARPVRLGRQGGHRRPRRPVHGELRRRSDPRRQRGGLGRARRIATIAGDHDASQYPPEYSHILP
LDFTCAELRGMIGKLVTQLRAHTAETSHPTELVAHSESMQALLHEVDTFADCDTNVLLHGETGVGKERIAQLLHEKHSRY
RHGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVVAHKGYFEQAGGGTLFLDEVGDLPLYQQVKLLRVLEDGAVLRVGAS
APVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGAVDKIALFKSFVAQVVGEERLAQLSDLPYWLT
DSVADSYFPGNVRELRNLAERVGVTVRQTGGWDAARLQRLIAHARNSAQPVPAESAAEVFVDRSKWDMNERNRVIAALDA
NGWRRQDTAQQLGISRKVLWEKMRKYQIFDEEPETRESE
>Mature_438_residues
PKRFTEEDEKHTRNRRARPVRLGRQGGHRRPRRPVHGELRRRSDPRRQRGGLGRARRIATIAGDHDASQYPPEYSHILPL
DFTCAELRGMIGKLVTQLRAHTAETSHPTELVAHSESMQALLHEVDTFADCDTNVLLHGETGVGKERIAQLLHEKHSRYR
HGEFVPVNCGAIPDGLFESLFFGHAKGSFTGAVVAHKGYFEQAGGGTLFLDEVGDLPLYQQVKLLRVLEDGAVLRVGASA
PVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGAVDKIALFKSFVAQVVGEERLAQLSDLPYWLTD
SVADSYFPGNVRELRNLAERVGVTVRQTGGWDAARLQRLIAHARNSAQPVPAESAAEVFVDRSKWDMNERNRVIAALDAN
GWRRQDTAQQLGISRKVLWEKMRKYQIFDEEPETRESE

Specific function: Required For Induction Of Expression Of The Hydrogenase- 4 Structural Genes. [C]

COG id: COG1221

COG function: function code KT; Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI87082117, Length=323, Percent_Identity=38.0804953560372, Blast_Score=195, Evalue=4e-51,
Organism=Escherichia coli, GI1790437, Length=353, Percent_Identity=35.9773371104816, Blast_Score=189, Evalue=4e-49,
Organism=Escherichia coli, GI1788550, Length=317, Percent_Identity=35.9621451104101, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI1789087, Length=327, Percent_Identity=36.697247706422, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI1789233, Length=335, Percent_Identity=33.4328358208955, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1790299, Length=290, Percent_Identity=39.3103448275862, Blast_Score=178, Evalue=5e-46,
Organism=Escherichia coli, GI87082152, Length=254, Percent_Identity=42.5196850393701, Blast_Score=177, Evalue=9e-46,
Organism=Escherichia coli, GI87081872, Length=324, Percent_Identity=35.4938271604938, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1788905, Length=290, Percent_Identity=35.5172413793103, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI1786524, Length=336, Percent_Identity=36.0119047619048, Blast_Score=168, Evalue=7e-43,
Organism=Escherichia coli, GI1787583, Length=333, Percent_Identity=33.3333333333333, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1789828, Length=154, Percent_Identity=40.2597402597403, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI87081858, Length=301, Percent_Identity=28.9036544850498, Blast_Score=99, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 49427; Mature: 49295

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKRFTEEDEKHTRNRRARPVRLGRQGGHRRPRRPVHGELRRRSDPRRQRGGLGRARRIA
CCCCCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCHHHEEE
TIAGDHDASQYPPEYSHILPLDFTCAELRGMIGKLVTQLRAHTAETSHPTELVAHSESMQ
EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ALLHEVDTFADCDTNVLLHGETGVGKERIAQLLHEKHSRYRHGEFVPVNCGAIPDGLFES
HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
LFFGHAKGSFTGAVVAHKGYFEQAGGGTLFLDEVGDLPLYQQVKLLRVLEDGAVLRVGAS
HHHCCCCCCCCEEEEEECCCHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCC
APVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGAVDKIALFKSFV
CCEEEEEEEEECCCCCCHHHHHCCHHHHHHHEEEEEEEEECCCCHHCCCHHHHHHHHHHH
AQVVGEERLAQLSDLPYWLTDSVADSYFPGNVRELRNLAERVGVTVRQTGGWDAARLQRL
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCEEEEECCCCCHHHHHHH
IAHARNSAQPVPAESAAEVFVDRSKWDMNERNRVIAALDANGWRRQDTAQQLGISRKVLW
HHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCHHHHHH
EKMRKYQIFDEEPETRESE
HHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKRFTEEDEKHTRNRRARPVRLGRQGGHRRPRRPVHGELRRRSDPRRQRGGLGRARRIA
CCCCCCCHHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCHHHEEE
TIAGDHDASQYPPEYSHILPLDFTCAELRGMIGKLVTQLRAHTAETSHPTELVAHSESMQ
EEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ALLHEVDTFADCDTNVLLHGETGVGKERIAQLLHEKHSRYRHGEFVPVNCGAIPDGLFES
HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
LFFGHAKGSFTGAVVAHKGYFEQAGGGTLFLDEVGDLPLYQQVKLLRVLEDGAVLRVGAS
HHHCCCCCCCCEEEEEECCCHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEECCC
APVKVDFRLVAASNKKLPQLVKDGLFRADLYYRLAVIELSIPSLEERGAVDKIALFKSFV
CCEEEEEEEEECCCCCCHHHHHCCHHHHHHHEEEEEEEEECCCCHHCCCHHHHHHHHHHH
AQVVGEERLAQLSDLPYWLTDSVADSYFPGNVRELRNLAERVGVTVRQTGGWDAARLQRL
HHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCEEEEECCCCCHHHHHHH
IAHARNSAQPVPAESAAEVFVDRSKWDMNERNRVIAALDANGWRRQDTAQQLGISRKVLW
HHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCHHHHHH
EKMRKYQIFDEEPETRESE
HHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA