| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is 78066134
Identifier: 78066134
GI number: 78066134
Start: 1655718
End: 1656698
Strand: Direct
Name: 78066134
Synonym: Bcep18194_A4664
Alternate gene names: NA
Gene position: 1655718-1656698 (Clockwise)
Preceding gene: 78066133
Following gene: 78066135
Centisome position: 44.82
GC content: 69.42
Gene sequence:
>981_bases ATGTCTAGCGCCACCCTGCTGGCGCTGATGTTCGCGCTGATCTGCGCGGCGGCCGGGTTGCTGCTGTGGCGCGGAAGCCA GGTCCGCGAAGGGCGCGCCCATACGCAGCGGTTTTTCGACAGCCGGGTGGGACAGGGCGCGCACGCCGCAGCGCCGGCTG GCGACGCGCGCGCCGCGCGAGCTGCGGCGCCCGGTGCGGCGAATTCGCAGGCGCCGGAGCAAGGGTTCGCGCGCTGGCGT GCGTCGGTGTTCGATGCGTGGACCGTGCTGTCCGACCGTGCGGGCCTTGACGAGATTCGCGCCGGCCTCGTGCTGGCGCT TGTGGGCATCGCGCTGCTCGCGCTGTGGGCCGGCCTGGCCGGCGGCGTGCTTGCCGCGGCTGCCGCGCTCGTGGCGGGCG GGGTGCTCGTCGTGCTGTGGATCACGTCGCGAATCAGCCGGCGGCGCCTGAAGATCGTCCGGCAACTGCCTTCGTTTCTC GACGGGATCGTGCGGCTGGTGACGCTCGGAAACAGCGTGCCGGCGGCGTTCCAGTCGACGCTTCAGACGGCCGAGATGCC GCTGCGCCGCTGCCTCGACGACGTGTCGCGGATGCTGCGATCCGGCGTCGAGATCGATCGCGCCATGCTGCATGTCGCGC ACACGTACCGTATCCGCGAATTCGAACTGGTCGGCGCGGTGCTGCGTCTGTCGGTCCGCTACGGCGGGCGGGCGGACGTG ATGCTCGACCGGATGTCGACGTTCATGCGCGACCTCGAGCACGCGGAGCGCGAACTGTCCGCGATGTCGGCTGAGACCCG GATGTCTGCCTGGGTGCTGGCGCTGATGCCGATCGCGGTCGGCAGCTTCGTCATTGCCACGAGCCCGCACTATTTCACGG CGATGTGGAACGACGATAGCGGGCGTCAGCTGGTCTATCTGGCGTTTGCGCTACAGACGATGGGCGGTTTTTGGTTGTAC CGGCTCGCGCGGTTGAGGTGA
Upstream 100 bases:
>100_bases GGCATTCATCCGCATTCGCCGAAGCTTGCACGCTTCCGCAACACGCTTGTGTCGAGCGGCGGCGGGTTTGGCGGCAACTT CGGGCGAGGCGGGGGCTTCA
Downstream 100 bases:
>100_bases ATCGATGGATGCAAACCGTTTAGGCGCACTTGCGCTGGTGCTCGGATCGATCGGCGTGCTGCTGCTTGCCGTACTGGCGA TCGTTCGCGTCGTGCTCGTG
Product: Flp pilus assembly protein TadB
Products: NA
Alternate protein names: Flp Pilus Assembly Protein TadB; Type II Secretion System F Domain Protein; Flp Pilus Assembly Protein; Type II Secretion System; Type II Secretion System Protein F Domain; Type II Secretion System F Domain-Containing Protein; Pilus Assembly Transmembrane Protein; Tight Adherence TadB Related Transmembrane Protein; Pilus Assembly Protein Tadb; Flp Type Pilus Assembly Protein; Type II/IV Secretion System Membrane Protein; Tad Secretion System Secretion Accessory Protein; Type II Secretion System Integral Membrane Subunit; Tight Adherence TadB-Related Transmembrane Protein; Type IV Pilus Assembly Protein
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MSSATLLALMFALICAAAGLLLWRGSQVREGRAHTQRFFDSRVGQGAHAAAPAGDARAARAAAPGAANSQAPEQGFARWR ASVFDAWTVLSDRAGLDEIRAGLVLALVGIALLALWAGLAGGVLAAAAALVAGGVLVVLWITSRISRRRLKIVRQLPSFL DGIVRLVTLGNSVPAAFQSTLQTAEMPLRRCLDDVSRMLRSGVEIDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADV MLDRMSTFMRDLEHAERELSAMSAETRMSAWVLALMPIAVGSFVIATSPHYFTAMWNDDSGRQLVYLAFALQTMGGFWLY RLARLR
Sequences:
>Translated_326_residues MSSATLLALMFALICAAAGLLLWRGSQVREGRAHTQRFFDSRVGQGAHAAAPAGDARAARAAAPGAANSQAPEQGFARWR ASVFDAWTVLSDRAGLDEIRAGLVLALVGIALLALWAGLAGGVLAAAAALVAGGVLVVLWITSRISRRRLKIVRQLPSFL DGIVRLVTLGNSVPAAFQSTLQTAEMPLRRCLDDVSRMLRSGVEIDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADV MLDRMSTFMRDLEHAERELSAMSAETRMSAWVLALMPIAVGSFVIATSPHYFTAMWNDDSGRQLVYLAFALQTMGGFWLY RLARLR >Mature_325_residues SSATLLALMFALICAAAGLLLWRGSQVREGRAHTQRFFDSRVGQGAHAAAPAGDARAARAAAPGAANSQAPEQGFARWRA SVFDAWTVLSDRAGLDEIRAGLVLALVGIALLALWAGLAGGVLAAAAALVAGGVLVVLWITSRISRRRLKIVRQLPSFLD GIVRLVTLGNSVPAAFQSTLQTAEMPLRRCLDDVSRMLRSGVEIDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADVM LDRMSTFMRDLEHAERELSAMSAETRMSAWVLALMPIAVGSFVIATSPHYFTAMWNDDSGRQLVYLAFALQTMGGFWLYR LARLR
Specific function: Unknown
COG id: COG4965
COG function: function code U; Flp pilus assembly protein TadB
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35423; Mature: 35292
Theoretical pI: Translated: 11.38; Mature: 11.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSATLLALMFALICAAAGLLLWRGSQVREGRAHTQRFFDSRVGQGAHAAAPAGDARAAR CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH AAAPGAANSQAPEQGFARWRASVFDAWTVLSDRAGLDEIRAGLVLALVGIALLALWAGLA HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GGVLAAAAALVAGGVLVVLWITSRISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQST HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH LQTAEMPLRRCLDDVSRMLRSGVEIDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADV HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH MLDRMSTFMRDLEHAERELSAMSAETRMSAWVLALMPIAVGSFVIATSPHYFTAMWNDDS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCC GRQLVYLAFALQTMGGFWLYRLARLR CCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SSATLLALMFALICAAAGLLLWRGSQVREGRAHTQRFFDSRVGQGAHAAAPAGDARAAR CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH AAAPGAANSQAPEQGFARWRASVFDAWTVLSDRAGLDEIRAGLVLALVGIALLALWAGLA HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH GGVLAAAAALVAGGVLVVLWITSRISRRRLKIVRQLPSFLDGIVRLVTLGNSVPAAFQST HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH LQTAEMPLRRCLDDVSRMLRSGVEIDRAMLHVAHTYRIREFELVGAVLRLSVRYGGRADV HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH MLDRMSTFMRDLEHAERELSAMSAETRMSAWVLALMPIAVGSFVIATSPHYFTAMWNDDS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCC GRQLVYLAFALQTMGGFWLYRLARLR CCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA