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The map label for this gene is rbfA

Identifier: 78066112

GI number: 78066112

Start: 1626683

End: 1627081

Strand: Direct

Name: rbfA

Synonym: Bcep18194_A4642

Alternate gene names: 78066112

Gene position: 1626683-1627081 (Clockwise)

Preceding gene: 78066111

Following gene: 78066113

Centisome position: 44.03

GC content: 59.15

Gene sequence:

>399_bases
ATGTCCAGGAAACGTACTTCCCCCAATCGCAACGTACAGATTGCTGACCAGATTCAGCGCGATCTGTCCGAACTCATCAT
GCGCGAGGTCAAGGACCCGCGCATCGGCATCGTGACCATTCAGAGCGTGGAACTCACGCCGGATTACGCACATGCGAAGG
TCTACTTCACCGCGTTGACCGGCGATCCGGCCAAGACGCAGGAAGCGCTGAACCACGCGTCGGGTCACTTGCACAACCTG
TTGTTCAAGCGCCTGCACATTCATACGGTGCCGACGCTGCATTTCCACTACGACCAGACGATCGAGAAGGCCGTGGAAAT
GTCGCGCCTGATCAAGGAAGCGAACTCGACGCGCGCGAAGGACGACGACGAGGCCGATGCGGCCGCCAAGGACGACTGA

Upstream 100 bases:

>100_bases
CTCATGGGCGGGGCAGGCTTGGGCCTGTCCCGCCCATTTTCATGGTGGCGTGCCAACACTGGCCGCCGCTTTATCCTGAT
AAACGGATCACGGATCGATC

Downstream 100 bases:

>100_bases
GCTCGACCGGCCTATGACGACTGCAGCATCCCAACGTCCGCGCGTGCCCCGGCGCCTGCTGGACGGTGTCCTCCTGCTCG
ACAAGCCGGTCGGCCTGTCG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MSRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGDPAKTQEALNHASGHLHNL
LFKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAKDDDEADAAAKDD

Sequences:

>Translated_132_residues
MSRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGDPAKTQEALNHASGHLHNL
LFKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAKDDDEADAAAKDD
>Mature_131_residues
SRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGDPAKTQEALNHASGHLHNLL
FKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAKDDDEADAAAKDD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=36.2068965517241, Blast_Score=79, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 14982; Mature: 14851

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALT
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
GDPAKTQEALNHASGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCC
DDDEADAAAKDD
CCCCCCCCCCCC
>Mature Secondary Structure 
SRKRTSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALT
CCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
GDPAKTQEALNHASGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVEMSRLIKEANSTRAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCC
DDDEADAAAKDD
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA