| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is yjiJ [H]
Identifier: 78066026
GI number: 78066026
Start: 1528532
End: 1529785
Strand: Direct
Name: yjiJ [H]
Synonym: Bcep18194_A4555
Alternate gene names: 78066026
Gene position: 1528532-1529785 (Clockwise)
Preceding gene: 78066024
Following gene: 78066027
Centisome position: 41.38
GC content: 74.4
Gene sequence:
>1254_bases ATGTCCCGCTCGAACGCCCCGATCGCCCCGACTGCCGCCGCCGGCGCGTCTCCCGTCGATGATGCCGACCGCCGCGCCCG CACGGCCGCACTGGCCTGCATGGTCGGCCTCGCGGTCGTGCTCGGTGTCGGCCGCTTTGCGTTCACGCCCTTGTTGCCGC TGATGCTCGCGGACGGTTCGATCGGCCTGAAGGCCGGCGGCTGGCTCGCGTCGGCGAACTACGCGGGCTACTTCGTCGGC GCGGTCAGTTGCGCCGCGCTGCGGGTGGCGCCCGCGCGCATGGTGCGCATCGGGCTCGTGGCCACCGTGCTGCTCACCGC CGCGATGGGTGTCGGCCATCTGCTGCCCGTGTGGCTCGCGGTGCGCTTCGTGGCCGGCGTCGTCAGCGCGTGGACGTTCG TGTTCGTGTCGCAATGGGGGCTGCGGCGCCTGGCCGAACTGCATGCGCCGGAGTGGAGCGGGGTGATCTACGCGGGGCCC GGCGTCGGCATCGTGGTGACGGGGCTGATCGGCAGCGCGCTGGCCGGCCAGCGCGCTGCGTCGGGCTGGCTGGGGTTCGC GGCGCTGTCGGCCGTGCTGTCTGTCGTGATCTGGCGCACGTTTGCAGTTGCCCCGGCGCAAGCCGTGCCGGCGGGCGGTG CCGCGTCGCACGCGGCCGCCGCAACCGCGACGATGCCGGCCGAGACGCGCCGCCATCACGCGGACGCCGCGTGGCTCGTC GTGCTGTACGGCATGCCGGGCTTCGGCTACATCATCACCGCGACGTTCCTGCCGGTGATCGCGCGCGCCGCGCTGCCGGC CGGTTCGCCGTGGCCCGACCTGTTCTGGCCGATGTTCGGCGCGGCGCTGATCGTCGGCGCGATTACCGCCGCGCGACTGC CCGGCCACTGGGACAACCGGCTGCTGCTGGCCGCCGGCTGCGCGACGCAGGCGCTCGGCATCGCCGCCGGGATCGTGTGG CCGAACGCGGCCGGCTTCTCGATCGGCAGCGCGCTGCTCGGCCTGCCGTTCACCGCGATCACGCTGTTCGCGATGCGCGA GGCGCGGCGTTTGCACGGCGAGCGGGCCGCCGGGCTGATGGGCTATGCGACCGCGTCGTACGGGGTCGGGCAGATTCTCG GCCCGCTCGTCGCGGCGCCGCTGGCCGCGCGCTTCGGGTCGTTTTCCCCCGCGCTGTGGGTTGCGGTAGCCGCGCTGCTG CTGGGCGCCGCCGGCTTCGCGGCGACCGCCGCACGAAGGCGCCTGCAACCCTGA
Upstream 100 bases:
>100_bases ATTCTTAATTATTCATTTCTCAAGAACGTTTGGTCAAGCTAGGATGGAAGCATTCCGGTTTCCGATCCGGCCGGCGCGTT AAACGCCTGCCCATGCCGCC
Downstream 100 bases:
>100_bases TTTCGGCGGGGCCGGATCGTCTGCGGCACGGGCAAACTCGCTAGAATGAAGCCTTTCCCGCGCCGAGCGGGTGCGCGGGC AGCCGGCTGGCGGCCGTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MSRSNAPIAPTAAAGASPVDDADRRARTAALACMVGLAVVLGVGRFAFTPLLPLMLADGSIGLKAGGWLASANYAGYFVG AVSCAALRVAPARMVRIGLVATVLLTAAMGVGHLLPVWLAVRFVAGVVSAWTFVFVSQWGLRRLAELHAPEWSGVIYAGP GVGIVVTGLIGSALAGQRAASGWLGFAALSAVLSVVIWRTFAVAPAQAVPAGGAASHAAAATATMPAETRRHHADAAWLV VLYGMPGFGYIITATFLPVIARAALPAGSPWPDLFWPMFGAALIVGAITAARLPGHWDNRLLLAAGCATQALGIAAGIVW PNAAGFSIGSALLGLPFTAITLFAMREARRLHGERAAGLMGYATASYGVGQILGPLVAAPLAARFGSFSPALWVAVAALL LGAAGFAATAARRRLQP
Sequences:
>Translated_417_residues MSRSNAPIAPTAAAGASPVDDADRRARTAALACMVGLAVVLGVGRFAFTPLLPLMLADGSIGLKAGGWLASANYAGYFVG AVSCAALRVAPARMVRIGLVATVLLTAAMGVGHLLPVWLAVRFVAGVVSAWTFVFVSQWGLRRLAELHAPEWSGVIYAGP GVGIVVTGLIGSALAGQRAASGWLGFAALSAVLSVVIWRTFAVAPAQAVPAGGAASHAAAATATMPAETRRHHADAAWLV VLYGMPGFGYIITATFLPVIARAALPAGSPWPDLFWPMFGAALIVGAITAARLPGHWDNRLLLAAGCATQALGIAAGIVW PNAAGFSIGSALLGLPFTAITLFAMREARRLHGERAAGLMGYATASYGVGQILGPLVAAPLAARFGSFSPALWVAVAALL LGAAGFAATAARRRLQP >Mature_416_residues SRSNAPIAPTAAAGASPVDDADRRARTAALACMVGLAVVLGVGRFAFTPLLPLMLADGSIGLKAGGWLASANYAGYFVGA VSCAALRVAPARMVRIGLVATVLLTAAMGVGHLLPVWLAVRFVAGVVSAWTFVFVSQWGLRRLAELHAPEWSGVIYAGPG VGIVVTGLIGSALAGQRAASGWLGFAALSAVLSVVIWRTFAVAPAQAVPAGGAASHAAAATATMPAETRRHHADAAWLVV LYGMPGFGYIITATFLPVIARAALPAGSPWPDLFWPMFGAALIVGAITAARLPGHWDNRLLLAAGCATQALGIAAGIVWP NAAGFSIGSALLGLPFTAITLFAMREARRLHGERAAGLMGYATASYGVGQILGPLVAAPLAARFGSFSPALWVAVAALLL GAAGFAATAARRRLQP
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790788, Length=377, Percent_Identity=29.973474801061, Blast_Score=110, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010645 - InterPro: IPR016196 [H]
Pfam domain/function: PF06779 DUF1228 [H]
EC number: NA
Molecular weight: Translated: 42395; Mature: 42264
Theoretical pI: Translated: 11.66; Mature: 11.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSNAPIAPTAAAGASPVDDADRRARTAALACMVGLAVVLGVGRFAFTPLLPLMLADGS CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IGLKAGGWLASANYAGYFVGAVSCAALRVAPARMVRIGLVATVLLTAAMGVGHLLPVWLA CCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRFVAGVVSAWTFVFVSQWGLRRLAELHAPEWSGVIYAGPGVGIVVTGLIGSALAGQRAA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCHHH SGWLGFAALSAVLSVVIWRTFAVAPAQAVPAGGAASHAAAATATMPAETRRHHADAAWLV HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCEEEE VLYGMPGFGYIITATFLPVIARAALPAGSPWPDLFWPMFGAALIVGAITAARLPGHWDNR EEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC LLLAAGCATQALGIAAGIVWPNAAGFSIGSALLGLPFTAITLFAMREARRLHGERAAGLM EEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHH GYATASYGVGQILGPLVAAPLAARFGSFSPALWVAVAALLLGAAGFAATAARRRLQP HHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SRSNAPIAPTAAAGASPVDDADRRARTAALACMVGLAVVLGVGRFAFTPLLPLMLADGS CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC IGLKAGGWLASANYAGYFVGAVSCAALRVAPARMVRIGLVATVLLTAAMGVGHLLPVWLA CCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRFVAGVVSAWTFVFVSQWGLRRLAELHAPEWSGVIYAGPGVGIVVTGLIGSALAGQRAA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCHHH SGWLGFAALSAVLSVVIWRTFAVAPAQAVPAGGAASHAAAATATMPAETRRHHADAAWLV HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHCCCHHHHHHCCCCEEEE VLYGMPGFGYIITATFLPVIARAALPAGSPWPDLFWPMFGAALIVGAITAARLPGHWDNR EEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC LLLAAGCATQALGIAAGIVWPNAAGFSIGSALLGLPFTAITLFAMREARRLHGERAAGLM EEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHH GYATASYGVGQILGPLVAAPLAARFGSFSPALWVAVAALLLGAAGFAATAARRRLQP HHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]