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The map label for this gene is ynbD [H]

Identifier: 78065992

GI number: 78065992

Start: 1486176

End: 1487582

Strand: Direct

Name: ynbD [H]

Synonym: Bcep18194_A4521

Alternate gene names: 78065992

Gene position: 1486176-1487582 (Clockwise)

Preceding gene: 78065991

Following gene: 78065993

Centisome position: 40.23

GC content: 72.14

Gene sequence:

>1407_bases
ATGAGCGCGCTCGACGGCGGCGCGAGCGGCCTCGCCGAGCCGGCCTCGGCGGCCGGCGCGCGCGACGCGTCGTTCGCGCT
GCGCTTCGGCTGGCTCGCGGTGATGGGCGCCGTGTTCTTCTCGACCTACGGTTTCGCGAACTGGCTCGCCGCGCGTCGCG
CGGCGGTGCCGACTTTCGCGTTTGGCTGGGAACACGCGATCCCGTTCGTGCCGTGGACGATCGTGCCGTACTGGTCGATC
GACCTGCTGTATGCGCTGTCGTTCTTCTTCTGGACGCGCCGCGCCGACCTGCTCGATCACGTGAAGCGGCTGTTGACCGT
GCAGCTGATCTCGGTCGCATGCTTCATCGCGTGGCCGCTGCGTTTCGGGTTCGAGCGGCCCGACGCGGGTGGCGTGGCCG
GTGCGCTGTTCACGCTGCTGATGGGCTTCGACAAGCCGTTCAACCAGGCGCCGTCGCTGCACATCGGGCTGCTCGTCGTG
CTGTGGGCCGTCTATGCGAAGCACCTGCGCGGCACGCTCGCGCGGGTCGTGCTGCACCTGTGGTTCGCGGCGATCGGCGT
GTCGGTGCTGACCACCTACCAGCATCACGCGATCGACGTGCCGACCGGCGCGGCCGTCGGCTGTCTCGCGCTGTTCCTGT
TTCCGCTGCGCGATGCCGCGGGCCGGCTGCCGGGCGCCGATGCGTCGCCGGGCGCGGCCGGCCGTGCGCTCGCGCGCCGC
TATGCGCTTGGCGCGGCGGCGGTTGCGCTGGTGGCGCTCTGGTGCGTGCCGCGCACGCCCGGCTGGGCGCTGGCGGCAGG
GTGGGTCGCGCTGGCGCTCGCCTGTGTCGCGTGGATCTACCGGCGCGGTGCGCCCGGCGCATTCCAGAAGGACGCGCACG
GGCGTTTTCCGGTCGTCATTCGCTGGCTGCTCGCGCCGACGATCGCGGGCGCGTTCGTCAATTCGCGGCTGTGGACGTTC
CGGCAGCCGGCGCCGGTGCGGATCGACGAACGCGTATCTATCGGACGCACGCCGACCGCCCGCGACGTGCGCCGCCACGG
CTTCACCGCGCTGGTCGACCTGACCGCAGAAATGCCACGCTGGACCTCGGTGGATGCATCGCTCGCGTATGCGACCGTGC
CGCAGCTCGATCTCGTGGCGCCGACGGCCGAACAACTCGCGCAGGCCGTCGCGGCGCTCGAACGCCTGCATGGGGAAGGG
CGCAATGTGCTGGTCTGCTGCGCGCTCGGCTATGGCCGCAGCGTGCTGTGCGCGGCCGCATGGCTGGCGGCACGACGCGG
GCTCGGCGATGCGCGCGACGCGCTGGCCGCGGTGCGTACGGTGAGGCCGCATGCGGTGTGGTCGGACGACGGCGTGGCCG
TGCTGCAGCACTGGATCGATCGCCGGCGCGGCGCGGGAGGCGTGTGA

Upstream 100 bases:

>100_bases
TGGACGAACTCGTCGCGCGCGCGGGCTTCCGCAAGCTCGACCAGCGGATCGACGAAATGGGCATCTTCACGGTCAGCCTC
GCGCAGCGGGTCGACGCGTC

Downstream 100 bases:

>100_bases
TGCGCGATCCATCCGCGCCATTCAGGATTGCCGCCGCGCGCGGCGCGCTCGATGCGGGTGCGTGGGCGATCGCGGCCGCG
CTGGCTGCGGCCGGTGCCGG

Product: dual specificity protein phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MSALDGGASGLAEPASAAGARDASFALRFGWLAVMGAVFFSTYGFANWLAARRAAVPTFAFGWEHAIPFVPWTIVPYWSI
DLLYALSFFFWTRRADLLDHVKRLLTVQLISVACFIAWPLRFGFERPDAGGVAGALFTLLMGFDKPFNQAPSLHIGLLVV
LWAVYAKHLRGTLARVVLHLWFAAIGVSVLTTYQHHAIDVPTGAAVGCLALFLFPLRDAAGRLPGADASPGAAGRALARR
YALGAAAVALVALWCVPRTPGWALAAGWVALALACVAWIYRRGAPGAFQKDAHGRFPVVIRWLLAPTIAGAFVNSRLWTF
RQPAPVRIDERVSIGRTPTARDVRRHGFTALVDLTAEMPRWTSVDASLAYATVPQLDLVAPTAEQLAQAVAALERLHGEG
RNVLVCCALGYGRSVLCAAAWLAARRGLGDARDALAAVRTVRPHAVWSDDGVAVLQHWIDRRRGAGGV

Sequences:

>Translated_468_residues
MSALDGGASGLAEPASAAGARDASFALRFGWLAVMGAVFFSTYGFANWLAARRAAVPTFAFGWEHAIPFVPWTIVPYWSI
DLLYALSFFFWTRRADLLDHVKRLLTVQLISVACFIAWPLRFGFERPDAGGVAGALFTLLMGFDKPFNQAPSLHIGLLVV
LWAVYAKHLRGTLARVVLHLWFAAIGVSVLTTYQHHAIDVPTGAAVGCLALFLFPLRDAAGRLPGADASPGAAGRALARR
YALGAAAVALVALWCVPRTPGWALAAGWVALALACVAWIYRRGAPGAFQKDAHGRFPVVIRWLLAPTIAGAFVNSRLWTF
RQPAPVRIDERVSIGRTPTARDVRRHGFTALVDLTAEMPRWTSVDASLAYATVPQLDLVAPTAEQLAQAVAALERLHGEG
RNVLVCCALGYGRSVLCAAAWLAARRGLGDARDALAAVRTVRPHAVWSDDGVAVLQHWIDRRRGAGGV
>Mature_467_residues
SALDGGASGLAEPASAAGARDASFALRFGWLAVMGAVFFSTYGFANWLAARRAAVPTFAFGWEHAIPFVPWTIVPYWSID
LLYALSFFFWTRRADLLDHVKRLLTVQLISVACFIAWPLRFGFERPDAGGVAGALFTLLMGFDKPFNQAPSLHIGLLVVL
WAVYAKHLRGTLARVVLHLWFAAIGVSVLTTYQHHAIDVPTGAAVGCLALFLFPLRDAAGRLPGADASPGAAGRALARRY
ALGAAAVALVALWCVPRTPGWALAAGWVALALACVAWIYRRGAPGAFQKDAHGRFPVVIRWLLAPTIAGAFVNSRLWTFR
QPAPVRIDERVSIGRTPTARDVRRHGFTALVDLTAEMPRWTSVDASLAYATVPQLDLVAPTAEQLAQAVAALERLHGEGR
NVLVCCALGYGRSVLCAAAWLAARRGLGDARDALAAVRTVRPHAVWSDDGVAVLQHWIDRRRGAGGV

Specific function: Unknown

COG id: COG0671

COG function: function code I; Membrane-associated phospholipid phosphatase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein-tyrosine phosphatase family [H]

Homologues:

Organism=Escherichia coli, GI1787679, Length=441, Percent_Identity=37.6417233560091, Blast_Score=235, Evalue=5e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000387
- InterPro:   IPR000340
- InterPro:   IPR020422
- InterPro:   IPR000326
- InterPro:   IPR016130 [H]

Pfam domain/function: PF00782 DSPc; PF01569 PAP2 [H]

EC number: NA

Molecular weight: Translated: 50382; Mature: 50251

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: PS50056 TYR_PHOSPHATASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SALDGGASGLAEPASAAGARDASFALRFGWLAVMGAVFFSTYGFANWLAARRAAVPTFA
CCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH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HHHHHCCCCHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]