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The map label for this gene is fecI [H]

Identifier: 78065973

GI number: 78065973

Start: 1466881

End: 1467390

Strand: Direct

Name: fecI [H]

Synonym: Bcep18194_A4502

Alternate gene names: 78065973

Gene position: 1466881-1467390 (Clockwise)

Preceding gene: 78065972

Following gene: 78065974

Centisome position: 39.71

GC content: 69.22

Gene sequence:

>510_bases
ATGTCTGCTGACAAGCTGTCTCTCCATCGAGAAATCGACGCCCTCTACACCGGCCATCACGCGTGGCTGCGCGGCTGGTT
GAGCCGGAAGCTCGGTTGCGCGCACCGCGCGGCCGATCTCGCGCACGACACGTTCATGCGCCTGCTCGCGCGCGACGAGC
CGATCGGCGCCGACGAGCCGCGCGCGTTCCTGACGACGGTCGCTCAGCGCGTGCTGAGCAACCACTGGCGGCGCGAGCAG
ATCGAGCGCGCGTATCTCGATGTGCTCGCGCAGCGCCCTGAAGCCTATGCGCCGTCACCGGAGGAGCGGGCCGTCGTGCT
CGAGACGCTGCTCGAAATCGACCGGTTGCTCGACGGCCTGCCGCACGCGGCGAAGCGGGCGTTCCTGCTCGCGCAGCTCG
ACGGGCTCACGCAGGCCGAGATCGCGCGCGAACTCGGCGTGTCGCTGGCGACGGTGAAGCGCTATCTCGTGAAGGCCGGC
ACGCAGTGCTTCTTCGCGATGGCGGCCTGA

Upstream 100 bases:

>100_bases
GCCACCGCGCACCGGAACGCCGGTCGCCGTCCCGGTTTTGTATATAATAATCATTCTCATTTACAAAATCGTTGACGCCT
GCGCACCCCGGAACCCGGCC

Downstream 100 bases:

>100_bases
CCGATGGCCGCCCCGGGAGCACCGGCGGTGCCGCCGCAGGTGGCGCGGCGCGCGGTGGAATGGTGGGTCGACCGGCAGGC
CGGCCGCACCGATGAAGCGT

Product: sigma-24 (FecI-like)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSADKLSLHREIDALYTGHHAWLRGWLSRKLGCAHRAADLAHDTFMRLLARDEPIGADEPRAFLTTVAQRVLSNHWRREQ
IERAYLDVLAQRPEAYAPSPEERAVVLETLLEIDRLLDGLPHAAKRAFLLAQLDGLTQAEIARELGVSLATVKRYLVKAG
TQCFFAMAA

Sequences:

>Translated_169_residues
MSADKLSLHREIDALYTGHHAWLRGWLSRKLGCAHRAADLAHDTFMRLLARDEPIGADEPRAFLTTVAQRVLSNHWRREQ
IERAYLDVLAQRPEAYAPSPEERAVVLETLLEIDRLLDGLPHAAKRAFLLAQLDGLTQAEIARELGVSLATVKRYLVKAG
TQCFFAMAA
>Mature_168_residues
SADKLSLHREIDALYTGHHAWLRGWLSRKLGCAHRAADLAHDTFMRLLARDEPIGADEPRAFLTTVAQRVLSNHWRREQI
ERAYLDVLAQRPEAYAPSPEERAVVLETLLEIDRLLDGLPHAAKRAFLLAQLDGLTQAEIARELGVSLATVKRYLVKAGT
QCFFAMAA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=154, Percent_Identity=49.3506493506493, Blast_Score=159, Evalue=7e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18995; Mature: 18864

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSADKLSLHREIDALYTGHHAWLRGWLSRKLGCAHRAADLAHDTFMRLLARDEPIGADEP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
RAFLTTVAQRVLSNHWRREQIERAYLDVLAQRPEAYAPSPEERAVVLETLLEIDRLLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PHAAKRAFLLAQLDGLTQAEIARELGVSLATVKRYLVKAGTQCFFAMAA
CHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCC
>Mature Secondary Structure 
SADKLSLHREIDALYTGHHAWLRGWLSRKLGCAHRAADLAHDTFMRLLARDEPIGADEP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
RAFLTTVAQRVLSNHWRREQIERAYLDVLAQRPEAYAPSPEERAVVLETLLEIDRLLDGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PHAAKRAFLLAQLDGLTQAEIARELGVSLATVKRYLVKAGTQCFFAMAA
CHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]