Click here to switch to the map view.

The map label for this gene is ydcR [H]

Identifier: 78065950

GI number: 78065950

Start: 1443225

End: 1444658

Strand: Reverse

Name: ydcR [H]

Synonym: Bcep18194_A4479

Alternate gene names: 78065950

Gene position: 1444658-1443225 (Counterclockwise)

Preceding gene: 78065953

Following gene: 78065947

Centisome position: 39.11

GC content: 67.92

Gene sequence:

>1434_bases
ATGGAAACGCAAACGTCATTCCGCTACAGGCAACTGGCCGACCTCATCGTCGGCATGATCGAGAACGGCACGCTGGCGCC
GGGCACCCGGCTGCCGTCCGTGCGTACCGTCAGCGAACAGCAGCGCATCAGCGTGTCCACCGCGCTGCAGGCATACCGTC
TGCTCGAAGATCTCGGCGTGCTCGTATCGCGACCGCAGTCGGGCTTCTACGTCGCGGCCGCGCGTGGCGGCACGCTCGCG
TTGCCGAGCACCTCGCGCTCGCGCGCGAAAGCATCGACGGTGTCGATCAGCGGCGCAGTCGCCGCGATGCTCGAACATGC
AGCCAACTCGGCGCTCGTGCCGCTCGGATGCGCGGTGCCCGATCCGGCGCTGCTGCAATCGAAGCGGCTCGACCTGGCCC
TCGCCCGCGCGGCACGCCAGCACGGCACGCGCTACAACGTCTATTGCGCGCCCTACGGCGAGCCGGCACTGCGCCGCGAA
ATCGCGCGGCGGGCCATGCGCTTCGGGCATCCGCTGTCCGCCGACGACATCCTCGTCACGAACGGCTGCACCGAAGCGTT
GACGCTCGCGCTGAATGCCGTGGCAACACGCGGCGATACGATTGCGGTGGAATCGCCGACCTACTTCGGCCTGCTTCATA
CGCTGGAGGCACTGGGACTGAAGGCGCTGGAGTTGCCGACCGACCCGCTGCGCGGCGTCGACGTCGGCATGCTCGCGCAG
CGGCTCGAAGCGGAATCGATCGCCGCCTGCGTGCTGTCGTCGAGCTTCGGCAATCCGCTCGGCTCCGCGATGAGCGAGGA
CGACAAACGGGCGCTGCTTGCCCTGCTCGCACGCCATCGCGTGCCGCTGATCGAAGACGACGTCTACGGCGACATACACT
TCGGGCGAGACCGGCCGAGGCCGTTCAGCGCGCTCGACAGCGGGGCCGATACGATCTACTGCAGTTCGTTCTCGAAGAGC
CTCGCCCCGGGATACCGGATCGGCTGGATCGCGGCGGGTGCGCGCACTCAGCAGGTGATGGAACGCAAGCTTGCGCTCAG
CCTGTGCGGCCCCGTGTTGCTGCAGGTCGCGGTGGCCGACTTCCTCGCGAGCGGTGCATACGATGCGCACTTGCGCCGCA
TCCGGCGCGTGTTCGAGGACAACCTGGCACGGATGACGCGCACGATCGAGGCCAGCTTTCCGGCCGACACGAAAGTGAGC
CGGCCAGCCGGCGGTTTCGTGCTCTGGCTCGAACTGCCGAAGCGGTTCGATTCACGCGCGCTGTTCGATGCCGCGCTCGA
ACAGGGCGTGTGCTTCGCGCCGGGCGACATTTTCTCCGCCAGCCGGCGCTTTCGCCATTGCCTGCGCCTGAGCGCCGGGC
ATGTATGGAACGAACGTATCGAGGACGGTGTCCGGTGCCTCGGCCGGCTCGCGCGGGCACAACTCGCACGCTGA

Upstream 100 bases:

>100_bases
TAACAGCCACAATTTTCCGCCGATTTGACCGACACAATTATGCGTGGCGAGATCGTGTCGAACGGTCGATAATCGGGCAC
TCCCCTGCCGCTGGTGTCTC

Downstream 100 bases:

>100_bases
ACGCGGCGGCGGCCGCCCCGCAATCGCCCCGCTCAGCTGCCGATCTTGAACGCCGGCAACTGCTGCGCGAGCCGTGCGCC
CATTTCCGTACCGAGCGCCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
METQTSFRYRQLADLIVGMIENGTLAPGTRLPSVRTVSEQQRISVSTALQAYRLLEDLGVLVSRPQSGFYVAAARGGTLA
LPSTSRSRAKASTVSISGAVAAMLEHAANSALVPLGCAVPDPALLQSKRLDLALARAARQHGTRYNVYCAPYGEPALRRE
IARRAMRFGHPLSADDILVTNGCTEALTLALNAVATRGDTIAVESPTYFGLLHTLEALGLKALELPTDPLRGVDVGMLAQ
RLEAESIAACVLSSSFGNPLGSAMSEDDKRALLALLARHRVPLIEDDVYGDIHFGRDRPRPFSALDSGADTIYCSSFSKS
LAPGYRIGWIAAGARTQQVMERKLALSLCGPVLLQVAVADFLASGAYDAHLRRIRRVFEDNLARMTRTIEASFPADTKVS
RPAGGFVLWLELPKRFDSRALFDAALEQGVCFAPGDIFSASRRFRHCLRLSAGHVWNERIEDGVRCLGRLARAQLAR

Sequences:

>Translated_477_residues
METQTSFRYRQLADLIVGMIENGTLAPGTRLPSVRTVSEQQRISVSTALQAYRLLEDLGVLVSRPQSGFYVAAARGGTLA
LPSTSRSRAKASTVSISGAVAAMLEHAANSALVPLGCAVPDPALLQSKRLDLALARAARQHGTRYNVYCAPYGEPALRRE
IARRAMRFGHPLSADDILVTNGCTEALTLALNAVATRGDTIAVESPTYFGLLHTLEALGLKALELPTDPLRGVDVGMLAQ
RLEAESIAACVLSSSFGNPLGSAMSEDDKRALLALLARHRVPLIEDDVYGDIHFGRDRPRPFSALDSGADTIYCSSFSKS
LAPGYRIGWIAAGARTQQVMERKLALSLCGPVLLQVAVADFLASGAYDAHLRRIRRVFEDNLARMTRTIEASFPADTKVS
RPAGGFVLWLELPKRFDSRALFDAALEQGVCFAPGDIFSASRRFRHCLRLSAGHVWNERIEDGVRCLGRLARAQLAR
>Mature_477_residues
METQTSFRYRQLADLIVGMIENGTLAPGTRLPSVRTVSEQQRISVSTALQAYRLLEDLGVLVSRPQSGFYVAAARGGTLA
LPSTSRSRAKASTVSISGAVAAMLEHAANSALVPLGCAVPDPALLQSKRLDLALARAARQHGTRYNVYCAPYGEPALRRE
IARRAMRFGHPLSADDILVTNGCTEALTLALNAVATRGDTIAVESPTYFGLLHTLEALGLKALELPTDPLRGVDVGMLAQ
RLEAESIAACVLSSSFGNPLGSAMSEDDKRALLALLARHRVPLIEDDVYGDIHFGRDRPRPFSALDSGADTIYCSSFSKS
LAPGYRIGWIAAGARTQQVMERKLALSLCGPVLLQVAVADFLASGAYDAHLRRIRRVFEDNLARMTRTIEASFPADTKVS
RPAGGFVLWLELPKRFDSRALFDAALEQGVCFAPGDIFSASRRFRHCLRLSAGHVWNERIEDGVRCLGRLARAQLAR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI4507369, Length=247, Percent_Identity=28.3400809716599, Blast_Score=101, Evalue=2e-21,
Organism=Homo sapiens, GI7705897, Length=414, Percent_Identity=20.5314009661836, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI33469970, Length=414, Percent_Identity=20.5314009661836, Blast_Score=79, Evalue=1e-14,
Organism=Escherichia coli, GI1787710, Length=468, Percent_Identity=37.6068376068376, Blast_Score=322, Evalue=4e-89,
Organism=Escherichia coli, GI1790797, Length=461, Percent_Identity=37.0932754880694, Blast_Score=319, Evalue=3e-88,
Organism=Caenorhabditis elegans, GI17567663, Length=319, Percent_Identity=25.705329153605, Blast_Score=93, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6321000, Length=246, Percent_Identity=22.7642276422764, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21356535, Length=404, Percent_Identity=22.5247524752475, Blast_Score=90, Evalue=4e-18,
Organism=Drosophila melanogaster, GI18859735, Length=315, Percent_Identity=25.3968253968254, Blast_Score=89, Evalue=9e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51643; Mature: 51643

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METQTSFRYRQLADLIVGMIENGTLAPGTRLPSVRTVSEQQRISVSTALQAYRLLEDLGV
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LVSRPQSGFYVAAARGGTLALPSTSRSRAKASTVSISGAVAAMLEHAANSALVPLGCAVP
HHCCCCCCEEEEEECCCEEECCCCCCHHHHHHHEEHHHHHHHHHHHHCCCCEEECCCCCC
DPALLQSKRLDLALARAARQHGTRYNVYCAPYGEPALRREIARRAMRFGHPLSADDILVT
CHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE
NGCTEALTLALNAVATRGDTIAVESPTYFGLLHTLEALGLKALELPTDPLRGVDVGMLAQ
CCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHH
RLEAESIAACVLSSSFGNPLGSAMSEDDKRALLALLARHRVPLIEDDVYGDIHFGRDRPR
HHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCC
PFSALDSGADTIYCSSFSKSLAPGYRIGWIAAGARTQQVMERKLALSLCGPVLLQVAVAD
CCHHHCCCCCEEEECCHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLASGAYDAHLRRIRRVFEDNLARMTRTIEASFPADTKVSRPAGGFVLWLELPKRFDSRA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHCCHHH
LFDAALEQGVCFAPGDIFSASRRFRHCLRLSAGHVWNERIEDGVRCLGRLARAQLAR
HHHHHHHCCCEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
METQTSFRYRQLADLIVGMIENGTLAPGTRLPSVRTVSEQQRISVSTALQAYRLLEDLGV
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LVSRPQSGFYVAAARGGTLALPSTSRSRAKASTVSISGAVAAMLEHAANSALVPLGCAVP
HHCCCCCCEEEEEECCCEEECCCCCCHHHHHHHEEHHHHHHHHHHHHCCCCEEECCCCCC
DPALLQSKRLDLALARAARQHGTRYNVYCAPYGEPALRREIARRAMRFGHPLSADDILVT
CHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE
NGCTEALTLALNAVATRGDTIAVESPTYFGLLHTLEALGLKALELPTDPLRGVDVGMLAQ
CCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHH
RLEAESIAACVLSSSFGNPLGSAMSEDDKRALLALLARHRVPLIEDDVYGDIHFGRDRPR
HHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCC
PFSALDSGADTIYCSSFSKSLAPGYRIGWIAAGARTQQVMERKLALSLCGPVLLQVAVAD
CCHHHCCCCCEEEECCHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLASGAYDAHLRRIRRVFEDNLARMTRTIEASFPADTKVSRPAGGFVLWLELPKRFDSRA
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHCCHHH
LFDAALEQGVCFAPGDIFSASRRFRHCLRLSAGHVWNERIEDGVRCLGRLARAQLAR
HHHHHHHCCCEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]