| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is proP [H]
Identifier: 78065895
GI number: 78065895
Start: 1381000
End: 1382487
Strand: Reverse
Name: proP [H]
Synonym: Bcep18194_A4424
Alternate gene names: 78065895
Gene position: 1382487-1381000 (Counterclockwise)
Preceding gene: 78065897
Following gene: 78065892
Centisome position: 37.42
GC content: 67.61
Gene sequence:
>1488_bases ATGACCTTGACCGCAACACACGTCAGCCCGACCGCTGCTTCTTCCTCCGCTTCGTCGTCCGGCGAAGCCCCGCTCGTCGC GGACGACATAACCGTCGTCGACCAGAGCCTACTCAAGCGCGCCGTCAGCGCGATGGCCATCGGCAACGCGATGGAATGGT TCGACTTCGGCGTCTACAGCTACATCGCCGTCACGCTCGGCAAGGTGTTCTTCCCGTCCAGCAGCCCGTCCGCGCAGCTG CTCGCGACCTTCGGCACGTTCGCGGCCGCGTTCCTCGTGCGCCCGCTCGGCGGCATGGTGTTCGGCCCGCTCGGCGACCG CATCGGCCGCCAGCGCGTGCTCGCCGCCACGATGATCATGATGGCCGTCGGCACCTTCGCGATCGGCCTGATCCCCAGCT ACGCGTCGATCGGCATCATGGCGCCCGTGCTGCTGCTCGTCGCCCGCCTCGTGCAGGGTTTCTCGACCGGCGGCGAATAC GGCGGCGCAGCCACCTTCATCGCCGAATTCTCGACCGACAAGCGCCGCGGCTTCATGGGCAGCTTCCTCGAATTCGGCAC GCTGATCGGTTACGTGATGGGTGCGGGCGTCGTCGCGCTGCTCACCGCGTCGCTGTCGCAGGAGGCGCTGCTGTCGTGGG GCTGGCGCGTGCCGTTCCTGATCGCCGGCCCGCTCGGCCTGATCGGTCTCTACATCCGGATGAAGCTCGAGGAAACGCCT GCGTTCAAGCGCCAGGCCGAAGAGCGCGAAGCGCAGGACAAGGCCGTGCCGAAGACGCGCTTCCGCGAAACGCTGATGCG CAACTGGCGTGCCCTGCTGCTGTGCGTCGGCCTCGTGCTGATCTTCAACGTGACCGACTACATGGTGCTGTCGTACCTGC CGAGCTTCATGTCGTCGACGCTGCACTTCGACGAATCGCACAGCCTCGTGCTCGTGCTGATCGTGATGGTGCTGATGATG CCGCTGACGCTCGCCGCCGGCCGCCTGTCCGACCGGATCGGCCGCAAGCCCGTGATGCTCGCCGGCTGCGTCGGCCTGCT CGCGCTGTCGATCCCGTCGATGATGCTGATCCATGCGGGCACCACGGCGTCGGTGTTCGGCGGCCTGCTGATCCTCGGCG TGCTGCTGTCGTGCTTCACCGGCGTGATGCCGTCGGCGCTGCCGGCGCTGTTCCCGACCGAGATCCGCTACGGCGCGCTC GCGATCGGCTTCAACGTGTCGGTGTCGCTGTTCGGCGGCACGACGCCGCTCGTGACCGCGTGGCTGGTCGACGTCACCCA CAACCTGATGATGCCCGCGTACTACATGATGGGCGCCGCCGTGATCGGCATCGTGTCGGTCGTCGCGCTCGCCGAAACCG CGCGTCAGCCGCTCAAGGGTTCGCCGCCGGCCGTCGCGTCGCGTCGCGAAGCCCATCAGCTCGTGCGCCAGATGCGCGAG GACGACGAATCGGAGATGTACGGTGTCGTATCGCCGGCACGCGCCTGA
Upstream 100 bases:
>100_bases TAAGTGCTTAAAGGTTTGCCCCGACGCGCCGCACCCGACACCGCGCTCGCCGGCAAACCGTGTCGGACGGCCCGCCCGTT CGGCGCAGTCAAAGGAGTGC
Downstream 100 bases:
>100_bases GCGTCGCCCATGAAAAAGCCCCGGCCGAAGCCGGGGCCCGATCGAACCCGATCCGCCCGACCGGCTTGCGCCGGCCGGGC TTTTTTCATCCATGCGACGC
Product: major facilitator transporter
Products: betaine [Cytoplasm]; Proton [Cytoplasm]; L-proline [Cytoplasm] [C]
Alternate protein names: Proline porter II; PPII [H]
Number of amino acids: Translated: 495; Mature: 494
Protein sequence:
>495_residues MTLTATHVSPTAASSSASSSGEAPLVADDITVVDQSLLKRAVSAMAIGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSAQL LATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAATMIMMAVGTFAIGLIPSYASIGIMAPVLLLVARLVQGFSTGGEY GGAATFIAEFSTDKRRGFMGSFLEFGTLIGYVMGAGVVALLTASLSQEALLSWGWRVPFLIAGPLGLIGLYIRMKLEETP AFKRQAEEREAQDKAVPKTRFRETLMRNWRALLLCVGLVLIFNVTDYMVLSYLPSFMSSTLHFDESHSLVLVLIVMVLMM PLTLAAGRLSDRIGRKPVMLAGCVGLLALSIPSMMLIHAGTTASVFGGLLILGVLLSCFTGVMPSALPALFPTEIRYGAL AIGFNVSVSLFGGTTPLVTAWLVDVTHNLMMPAYYMMGAAVIGIVSVVALAETARQPLKGSPPAVASRREAHQLVRQMRE DDESEMYGVVSPARA
Sequences:
>Translated_495_residues MTLTATHVSPTAASSSASSSGEAPLVADDITVVDQSLLKRAVSAMAIGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSAQL LATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAATMIMMAVGTFAIGLIPSYASIGIMAPVLLLVARLVQGFSTGGEY GGAATFIAEFSTDKRRGFMGSFLEFGTLIGYVMGAGVVALLTASLSQEALLSWGWRVPFLIAGPLGLIGLYIRMKLEETP AFKRQAEEREAQDKAVPKTRFRETLMRNWRALLLCVGLVLIFNVTDYMVLSYLPSFMSSTLHFDESHSLVLVLIVMVLMM PLTLAAGRLSDRIGRKPVMLAGCVGLLALSIPSMMLIHAGTTASVFGGLLILGVLLSCFTGVMPSALPALFPTEIRYGAL AIGFNVSVSLFGGTTPLVTAWLVDVTHNLMMPAYYMMGAAVIGIVSVVALAETARQPLKGSPPAVASRREAHQLVRQMRE DDESEMYGVVSPARA >Mature_494_residues TLTATHVSPTAASSSASSSGEAPLVADDITVVDQSLLKRAVSAMAIGNAMEWFDFGVYSYIAVTLGKVFFPSSSPSAQLL ATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAATMIMMAVGTFAIGLIPSYASIGIMAPVLLLVARLVQGFSTGGEYG GAATFIAEFSTDKRRGFMGSFLEFGTLIGYVMGAGVVALLTASLSQEALLSWGWRVPFLIAGPLGLIGLYIRMKLEETPA FKRQAEEREAQDKAVPKTRFRETLMRNWRALLLCVGLVLIFNVTDYMVLSYLPSFMSSTLHFDESHSLVLVLIVMVLMMP LTLAAGRLSDRIGRKPVMLAGCVGLLALSIPSMMLIHAGTTASVFGGLLILGVLLSCFTGVMPSALPALFPTEIRYGALA IGFNVSVSLFGGTTPLVTAWLVDVTHNLMMPAYYMMGAAVIGIVSVVALAETARQPLKGSPPAVASRREAHQLVRQMRED DESEMYGVVSPARA
Specific function: Proton symporter that senses osmotic shifts and responds by importing osmolytes such as proline, glycine betaine, stachydrine, pipecolic acid, ectoine and taurine. It is both an osmosensor and an osmoregulator which is available to participate early in th
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1790550, Length=467, Percent_Identity=50.321199143469, Blast_Score=519, Evalue=1e-148, Organism=Escherichia coli, GI1788292, Length=431, Percent_Identity=31.322505800464, Blast_Score=208, Evalue=6e-55, Organism=Escherichia coli, GI1788942, Length=405, Percent_Identity=34.5679012345679, Blast_Score=202, Evalue=4e-53, Organism=Escherichia coli, GI1789941, Length=429, Percent_Identity=34.032634032634, Blast_Score=189, Evalue=3e-49, Organism=Escherichia coli, GI87082231, Length=430, Percent_Identity=23.2558139534884, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI87082404, Length=365, Percent_Identity=23.2876712328767, Blast_Score=70, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR015041 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF08946 Osmo_CC; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 52721; Mature: 52590
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1 ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 5.5 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTATHVSPTAASSSASSSGEAPLVADDITVVDQSLLKRAVSAMAIGNAMEWFDFGVYS CCEEECCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH YIAVTLGKVFFPSSSPSAQLLATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAATMIM HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHH MAVGTFAIGLIPSYASIGIMAPVLLLVARLVQGFSTGGEYGGAATFIAEFSTDKRRGFMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH SFLEFGTLIGYVMGAGVVALLTASLSQEALLSWGWRVPFLIAGPLGLIGLYIRMKLEETP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHEECCCCC AFKRQAEEREAQDKAVPKTRFRETLMRNWRALLLCVGLVLIFNVTDYMVLSYLPSFMSST HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHFDESHSLVLVLIVMVLMMPLTLAAGRLSDRIGRKPVMLAGCVGLLALSIPSMMLIHAG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC TTASVFGGLLILGVLLSCFTGVMPSALPALFPTEIRYGALAIGFNVSVSLFGGTTPLVTA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCEEEEECEEEEEEECCCHHHHHH WLVDVTHNLMMPAYYMMGAAVIGIVSVVALAETARQPLKGSPPAVASRREAHQLVRQMRE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC DDESEMYGVVSPARA CCHHHHEECCCCCCC >Mature Secondary Structure TLTATHVSPTAASSSASSSGEAPLVADDITVVDQSLLKRAVSAMAIGNAMEWFDFGVYS CEEECCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH YIAVTLGKVFFPSSSPSAQLLATFGTFAAAFLVRPLGGMVFGPLGDRIGRQRVLAATMIM HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHH MAVGTFAIGLIPSYASIGIMAPVLLLVARLVQGFSTGGEYGGAATFIAEFSTDKRRGFMG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHH SFLEFGTLIGYVMGAGVVALLTASLSQEALLSWGWRVPFLIAGPLGLIGLYIRMKLEETP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHEECCCCC AFKRQAEEREAQDKAVPKTRFRETLMRNWRALLLCVGLVLIFNVTDYMVLSYLPSFMSST HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHFDESHSLVLVLIVMVLMMPLTLAAGRLSDRIGRKPVMLAGCVGLLALSIPSMMLIHAG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC TTASVFGGLLILGVLLSCFTGVMPSALPALFPTEIRYGALAIGFNVSVSLFGGTTPLVTA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCEEEEECEEEEEEECCCHHHHHH WLVDVTHNLMMPAYYMMGAAVIGIVSVVALAETARQPLKGSPPAVASRREAHQLVRQMRE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC DDESEMYGVVSPARA CCHHHHEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: betaine [Periplasm]; Proton [Periplasm]; L-proline [Periplasm] [C]
Specific reaction: Proton [Periplasm] + betaine [Periplasm] = Proton [Cytoplasm] + betaine [Cytoplasm] Proton [Periplasm] + L-proline [Periplasm] = Proton [Cytoplasm] + L-proline [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]