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The map label for this gene is pecT [H]

Identifier: 78065880

GI number: 78065880

Start: 1368387

End: 1369235

Strand: Reverse

Name: pecT [H]

Synonym: Bcep18194_A4409

Alternate gene names: 78065880

Gene position: 1369235-1368387 (Counterclockwise)

Preceding gene: 78065892

Following gene: 78065879

Centisome position: 37.07

GC content: 70.44

Gene sequence:

>849_bases
ATGCGTCCGTTACCGCCCGAGCTGCTGCGCAGCTTCGTCGCCGTCGCCCAGTCCGGCAGCTTCACCGCCGCGTCCGAGCG
CGTGAGCCTGTCGCAGTCGACCGTCAGCCAGCATATCCGCCGCCTCGAGGAGCTGCTCGACCGGCCGCTGTTCGAGCGCG
ACACGCGCAACGTGCACCTGTCGCAGCACGGCGATGCGCTGTTCCGCTACGCGGTGCGCATCCTCGAGCTGATGGACGAA
GCCGTCACGTCGGTGTGCGGGCCGCCGCTGTCGGGCAAGGTGCGGCTCGCGATGTCGGAGGATTTCGCGTCGGCACACCT
GACCGCCGCGCTCGCGAGCTTCGTGCAGCGCAATCCGGAAGTCGAGCTCGCGATCTCGACCGGGCTGTCGGGCGACCTGT
TCGACGCGCTCGACGAAGGGCGGCACGATCTCGTGTTCGCGAAGCGCATCGCCGGCAGCCGGCGCGGCCGCGTGATCCGC
AGCGAGCCGCTGTACTGGTGCACGGGCCCCGATTCGCGGATCACCGGCCACGAGACCGTGCTGCCGCTTGCGATGCATCC
GGAACCGAGCGTGTCGCGCCGCCGCGTGCTCGAATCGCTCGAAGCCGTCGGGCGCCCTTACCGGATCGCGGTCGTGAGCA
GCAGCGTCGCGGTGTTGCGTGCCGCCGCAAGCGCGGGGCTCGGCGTCAGCGCGTTCGCCGGCTACGTGATCCCGGCCGGG
CTCGCGCGGCTCGAGGCCGGGCTGCCCGAACTCGGCGAACTCGAATACGTGATCGACCGGCCGGCGGCCGCATCGCGTTC
GACGCTTGCCCTCGAAGCCACGCTGATTACAGCCGCATCGGAGTTGTAA

Upstream 100 bases:

>100_bases
GTACGCCCCGTTGCGGGCCGCACCGGGGCGTGATCCGATACTAGCGCCGCAAAATCCGGCCATTTATGAAGTTGTCGAAA
CCGATTCAGTGGATTTAGCA

Downstream 100 bases:

>100_bases
GCGCATCGGGCGCGATCCACGCAGCGGCGAGCGCGCCCGGTGCCCGCGCCCGCAACTGACAGCTTTGCCCGGAACGCGTC
ATCGTCCACGCAGCACCCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MRPLPPELLRSFVAVAQSGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTRNVHLSQHGDALFRYAVRILELMDE
AVTSVCGPPLSGKVRLAMSEDFASAHLTAALASFVQRNPEVELAISTGLSGDLFDALDEGRHDLVFAKRIAGSRRGRVIR
SEPLYWCTGPDSRITGHETVLPLAMHPEPSVSRRRVLESLEAVGRPYRIAVVSSSVAVLRAAASAGLGVSAFAGYVIPAG
LARLEAGLPELGELEYVIDRPAAASRSTLALEATLITAASEL

Sequences:

>Translated_282_residues
MRPLPPELLRSFVAVAQSGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTRNVHLSQHGDALFRYAVRILELMDE
AVTSVCGPPLSGKVRLAMSEDFASAHLTAALASFVQRNPEVELAISTGLSGDLFDALDEGRHDLVFAKRIAGSRRGRVIR
SEPLYWCTGPDSRITGHETVLPLAMHPEPSVSRRRVLESLEAVGRPYRIAVVSSSVAVLRAAASAGLGVSAFAGYVIPAG
LARLEAGLPELGELEYVIDRPAAASRSTLALEATLITAASEL
>Mature_282_residues
MRPLPPELLRSFVAVAQSGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTRNVHLSQHGDALFRYAVRILELMDE
AVTSVCGPPLSGKVRLAMSEDFASAHLTAALASFVQRNPEVELAISTGLSGDLFDALDEGRHDLVFAKRIAGSRRGRVIR
SEPLYWCTGPDSRITGHETVLPLAMHPEPSVSRRRVLESLEAVGRPYRIAVVSSSVAVLRAAASAGLGVSAFAGYVIPAG
LARLEAGLPELGELEYVIDRPAAASRSTLALEATLITAASEL

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=254, Percent_Identity=32.6771653543307, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787806, Length=157, Percent_Identity=35.031847133758, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=33.5664335664336, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786448, Length=144, Percent_Identity=31.9444444444444, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787589, Length=190, Percent_Identity=30.5263157894737, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=252, Percent_Identity=26.5873015873016, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1788748, Length=241, Percent_Identity=27.8008298755187, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=147, Percent_Identity=29.2517006802721, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790262, Length=142, Percent_Identity=28.8732394366197, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082132, Length=265, Percent_Identity=27.1698113207547, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1786401, Length=254, Percent_Identity=26.7716535433071, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788706, Length=120, Percent_Identity=32.5, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30375; Mature: 30375

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLPPELLRSFVAVAQSGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTRNVHL
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
SQHGDALFRYAVRILELMDEAVTSVCGPPLSGKVRLAMSEDFASAHLTAALASFVQRNPE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC
VELAISTGLSGDLFDALDEGRHDLVFAKRIAGSRRGRVIRSEPLYWCTGPDSRITGHETV
EEEEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCCCEE
LPLAMHPEPSVSRRRVLESLEAVGRPYRIAVVSSSVAVLRAAASAGLGVSAFAGYVIPAG
EEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHH
LARLEAGLPELGELEYVIDRPAAASRSTLALEATLITAASEL
HHHHHCCCCCCCCCHHEECCCCCCCCCCEEEHHHHHHHHHCC
>Mature Secondary Structure
MRPLPPELLRSFVAVAQSGSFTAASERVSLSQSTVSQHIRRLEELLDRPLFERDTRNVHL
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
SQHGDALFRYAVRILELMDEAVTSVCGPPLSGKVRLAMSEDFASAHLTAALASFVQRNPE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC
VELAISTGLSGDLFDALDEGRHDLVFAKRIAGSRRGRVIRSEPLYWCTGPDSRITGHETV
EEEEEECCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCCCCCEE
LPLAMHPEPSVSRRRVLESLEAVGRPYRIAVVSSSVAVLRAAASAGLGVSAFAGYVIPAG
EEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHH
LARLEAGLPELGELEYVIDRPAAASRSTLALEATLITAASEL
HHHHHCCCCCCCCCHHEECCCCCCCCCCEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]