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The map label for this gene is rbcR [H]

Identifier: 78065841

GI number: 78065841

Start: 1324914

End: 1325876

Strand: Direct

Name: rbcR [H]

Synonym: Bcep18194_A4370

Alternate gene names: 78065841

Gene position: 1324914-1325876 (Clockwise)

Preceding gene: 78065838

Following gene: 78065842

Centisome position: 35.87

GC content: 68.12

Gene sequence:

>963_bases
ATGGCTATGGGCGAGGGGACTGTGCGCGGATTCGATTCATATCTCACTTTTCAGAAGCTCGAGGTGTTCTGCACGGTGGT
CGAGCTCGGCAGCGTCACGCGCGCGGCCGACCGGCTGTGCATCGCGCAGCCGGTCGTGACCGCGCATGTGCGTAGCATGG
AGAAGCGGCTCGGCTATGCGCTCGTGAAGCGCGCCGGCCGCAACATCGCGCTCACGGAAGCGGGCGAGCGCATCTATCGA
TGGGCAACCGAGGTCATCACGCGCACGCGCGAGGTCGAGCGCGAACTCGCCGGTCTCGAGCAGGGTGAAATGGGCAACGC
GGCGGTCGCGACGTCGATGTCGATCGGCTCGTACGCGTTGCCGCCGCTGTTCGCCGAGTTCCACCGGCGGCAGCCCGACG
GGCTCGTGACCGTGCAGATCCTGACGCCGCAGGCGGCCGTCGATGCGATCCGCGTCGGCGGGTGCGATTTCGCGGTCATC
CTGATCGCGGCCAATCAGGATCTCGACGGGCTGACGACCATTCCCGTGTGGGAGGACGAACTGCTGCTCGTGTGCGGCGC
ATCGAGCCCGTGGGCCGCGCAGCCGGCCCGCGAGCTCGACCTGCGCGGCGTGCCGTTCGTCAGCACGCCGCGCCACCAGC
CGCGCCGCGAGCTCGAAGAGGCGCTGCTGCGCGAGCGCGGCCTCGAGCAGCGCAAGGTCGTGATGGAACTCGGGCATCCG
GAAGCGATGAAGCACGTGGTGCGCGAGAACCTCGGCGTGAGCTTCATGTTCGCGTCGGCGGTGCGCGCGGAGGTCGAGCG
GCGCGAGCTGGTCGTGCTCGATCGCCCCGAGCTGTCGATGAAGGTGCCGATCTATCTCGTGCATCGCGACGACAAGCGCT
TCTCGGCGTTCCAGGCCGAGCTCGTGCAATTCATCGTCGATTCCGCGTCGCCCGGCGCGGCAGCGGGCATCCCGAATTCA
TAG

Upstream 100 bases:

>100_bases
GGTGGGCCTGAACGCAGGCCTCTCGGTTGTGGGTTCATTCGATTGTGCGTAACCTGAAACATATCTTCCAATACGTATTG
CGGTGCCATCCGATACCCGG

Downstream 100 bases:

>100_bases
TCAATGGGCTATCTGTTTGGCGATCAATAGCTAATAGACCTATGGTCGGCCCGGTTCTAAGCTGGCCGGGTGCTTGACGG
TCCGCATCGAGACGCGATGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MAMGEGTVRGFDSYLTFQKLEVFCTVVELGSVTRAADRLCIAQPVVTAHVRSMEKRLGYALVKRAGRNIALTEAGERIYR
WATEVITRTREVERELAGLEQGEMGNAAVATSMSIGSYALPPLFAEFHRRQPDGLVTVQILTPQAAVDAIRVGGCDFAVI
LIAANQDLDGLTTIPVWEDELLLVCGASSPWAAQPARELDLRGVPFVSTPRHQPRRELEEALLRERGLEQRKVVMELGHP
EAMKHVVRENLGVSFMFASAVRAEVERRELVVLDRPELSMKVPIYLVHRDDKRFSAFQAELVQFIVDSASPGAAAGIPNS

Sequences:

>Translated_320_residues
MAMGEGTVRGFDSYLTFQKLEVFCTVVELGSVTRAADRLCIAQPVVTAHVRSMEKRLGYALVKRAGRNIALTEAGERIYR
WATEVITRTREVERELAGLEQGEMGNAAVATSMSIGSYALPPLFAEFHRRQPDGLVTVQILTPQAAVDAIRVGGCDFAVI
LIAANQDLDGLTTIPVWEDELLLVCGASSPWAAQPARELDLRGVPFVSTPRHQPRRELEEALLRERGLEQRKVVMELGHP
EAMKHVVRENLGVSFMFASAVRAEVERRELVVLDRPELSMKVPIYLVHRDDKRFSAFQAELVQFIVDSASPGAAAGIPNS
>Mature_319_residues
AMGEGTVRGFDSYLTFQKLEVFCTVVELGSVTRAADRLCIAQPVVTAHVRSMEKRLGYALVKRAGRNIALTEAGERIYRW
ATEVITRTREVERELAGLEQGEMGNAAVATSMSIGSYALPPLFAEFHRRQPDGLVTVQILTPQAAVDAIRVGGCDFAVIL
IAANQDLDGLTTIPVWEDELLLVCGASSPWAAQPARELDLRGVPFVSTPRHQPRRELEEALLRERGLEQRKVVMELGHPE
AMKHVVRENLGVSFMFASAVRAEVERRELVVLDRPELSMKVPIYLVHRDDKRFSAFQAELVQFIVDSASPGAAAGIPNS

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=284, Percent_Identity=27.112676056338, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082132, Length=293, Percent_Identity=28.6689419795222, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788748, Length=254, Percent_Identity=26.7716535433071, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI157672245, Length=177, Percent_Identity=27.683615819209, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787530, Length=251, Percent_Identity=27.8884462151394, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87081904, Length=289, Percent_Identity=22.4913494809689, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786401, Length=135, Percent_Identity=29.6296296296296, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790399, Length=180, Percent_Identity=23.8888888888889, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789506, Length=171, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787601, Length=288, Percent_Identity=22.9166666666667, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1787806, Length=172, Percent_Identity=27.3255813953488, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35318; Mature: 35187

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMGEGTVRGFDSYLTFQKLEVFCTVVELGSVTRAADRLCIAQPVVTAHVRSMEKRLGYA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVKRAGRNIALTEAGERIYRWATEVITRTREVERELAGLEQGEMGNAAVATSMSIGSYAL
HHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCC
PPLFAEFHRRQPDGLVTVQILTPQAAVDAIRVGGCDFAVILIAANQDLDGLTTIPVWEDE
CHHHHHHHCCCCCCEEEEEEECCHHHHHHHEECCCCEEEEEEEECCCCCCCEECCCCCCC
LLLVCGASSPWAAQPARELDLRGVPFVSTPRHQPRRELEEALLRERGLEQRKVVMELGHP
EEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCH
EAMKHVVRENLGVSFMFASAVRAEVERRELVVLDRPELSMKVPIYLVHRDDKRFSAFQAE
HHHHHHHHHCCCEEHHHHHHHHHHHHHCCEEEEECCCCCEECCEEEEECCCCHHHHHHHH
LVQFIVDSASPGAAAGIPNS
HHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AMGEGTVRGFDSYLTFQKLEVFCTVVELGSVTRAADRLCIAQPVVTAHVRSMEKRLGYA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVKRAGRNIALTEAGERIYRWATEVITRTREVERELAGLEQGEMGNAAVATSMSIGSYAL
HHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCC
PPLFAEFHRRQPDGLVTVQILTPQAAVDAIRVGGCDFAVILIAANQDLDGLTTIPVWEDE
CHHHHHHHCCCCCCEEEEEEECCHHHHHHHEECCCCEEEEEEEECCCCCCCEECCCCCCC
LLLVCGASSPWAAQPARELDLRGVPFVSTPRHQPRRELEEALLRERGLEQRKVVMELGHP
EEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCH
EAMKHVVRENLGVSFMFASAVRAEVERRELVVLDRPELSMKVPIYLVHRDDKRFSAFQAE
HHHHHHHHHCCCEEHHHHHHHHHHHHHCCEEEEECCCCCEECCEEEEECCCCHHHHHHHH
LVQFIVDSASPGAAAGIPNS
HHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]