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The map label for this gene is recD [H]

Identifier: 78065795

GI number: 78065795

Start: 1276629

End: 1278932

Strand: Direct

Name: recD [H]

Synonym: Bcep18194_A4324

Alternate gene names: 78065795

Gene position: 1276629-1278932 (Clockwise)

Preceding gene: 78065794

Following gene: 78065796

Centisome position: 34.56

GC content: 72.53

Gene sequence:

>2304_bases
ATGAACATGAACGTGCAGGACGACACGCTCGAATTCACCGGCGGCCTCGTCGCGCGGCTGCCCGAACCGGCCGATTTCGG
CATCGCGCTCGCGGAAGGGTTTGCACGCCGCATCGGCGATCTCGCTCGCCGCGCCGGCGCACCGGCTGCGGCCGCGCGGT
GGGCGGCGCGCGCCGCGTTCGCGACGAGTCGTGCGACTGCGGGCGGCCATGTGTGCGTCGCGCTCGGCGCGCTCGCGCAG
CGCTACGAAGCACCGCTCGACGAAGTCCGCTCGGCGCTTGCCGCGAGCGGCGTGGTCGCGTTCGGCACGCTCGCGCGAGG
CGACGAGCGGCCGCTGATCGTCGACCGCCACGACCACCTGTACCTGTCGCGCTATTTCGACTACGAGCGGCGGCTTGCCG
ATGCGCTCGTCGCGCAGGCCGGTGTGGCCGCGCCCGACGAAGGTCTCGCGCCCGCCCGGTTGCGCGACAGCCTCGCGCGT
TACTTCGGGCCGGCAACCGGCGAAGTCGACTGGCAACGCGTCGCGGCGATCGTCGCGCTGACGGGCCGCGTGACGATCGT
CAGCGGCGGCCCGGGCACGGGCAAGACGACGACCGTCGTCGGCGTGCTGGCCTGTCTGCTCGACGCACACCCGGGGCTGC
GCGTCGCGCTGGCCGCACCGACCGGCAAGGCCGCGCAGCGGATGCAGGAAGCGCTGCATGCGCGGGCCGGCGACCTGCCG
CCCGAACTCGCGGCGCGCCTGCCCGATACGTCATACACGCTGCACCGGCTGCTGGGCGGCGGCGGGGCGGCCGGGTTCCG
GCATCATCGCGACAATCCGTTGCCGTACGACCTAATCGTCGTCGACGAGGCGTCGATGATCGACGTCGCGCTCGCCGCGC
ATCTGCTCGATGCGCTCGCGCCGGGTGCGCGACTCGTGCTGCTCGGTGACAAGGACCAACTGGCCGCGGTTGAAGCGGGC
GCCGTATTCGCGGAACTGAGCGCGCGGCCGGCGTTTACCGCCGCGGCGCGCACGCGCATCGCGCAGGCGCTCGGCATCGA
CGAGGCGGCCTTCGTCGCGGCATTGCCGGTGCAGGACGAAGCCGTTCCCGCCGCGCCCCCGGTTTCCGCCGTCGCCCGCG
CCCCGGCAGCTCTCTCGGCATCCGCTGTCGCCGCGACACGCAAACCGGCGTCGCGACGCAAAGTCGATGAACGACAGGCA
TCGCTCTTCGACGACGAACCGCAGGATGACGAAGTGTCGCCGACCAGCGCCGCGCCGCCGTCGGCCGCAGGTCCGATGCT
GACCGAAGCCGGTGACGCTGGAGTGGCAGGCGAGGCCCCCGCGTGGATCGAGGTCGACGAACTTGAGTGGCTCGACGCCG
TCGAGCTGCCGCCGTTCGACGCAAGCGACAGTGCGCTTGCGTCGGTCACATCGATACTGTCGGGCGAATCCGAAGCCGCG
TCTGCAACGTCTACGCCCGCGCCCGCACCGCTCGCCGACTGCGTGGTCTGGCTCGAACGCAATTACCGCTTCGGTCTCGA
TTCGCCGATCGGGCGGCTGTCGCTCGCGATCCGCAGCGGCGACGTGCAGGCCGCGCTCGACGCGCTGCCCGCCGACGATT
CCGCCGCCGCGTCGTTCCACGACGACGCGGGCGAGTCGCTCGCGGCGTCGACGGTCGAGCGGCTCGCGCGGCGCTTCGGT
GCCTATCTCGACGCGTTGCGCGACACGCTGGCCGCGCCGGTGCCCGATCCGCTGCCGCTGTTCGACGCGCTCAACCGGTT
CCGGATCCTGTGTGCAACCCGCAGCGGCTTGCGCGGCGCGGAGCACGTCAATGCGCTCGTGGCCGCGCACGTGCGCCACG
CGGCGCGTGTGCCGCTCGCGGTCGGCGCGCACTGGTTCACGGGGCGGCCGATCATGGTGACGCGCAACGACTATGCGCTC
GGGCTGTTCAACGGCGATATCGGCATCGCGCTGCCCGACGCGCACGGCGTGTTGCGCGTGTGGTTCAGGCGTGCGGACGG
CACCGCGCGCGCTGTGTCGCCGGCCGCGTTGCCGCCGCACGAAACCGCGTTCGCGTTGACGGTCCACAAGTCGCAGGGCT
CGGAATTCGACGAAGCCGCGCTCGTGCTGCCGGCGTCGTTCGGCCGCGTGCTCACGCGCGAACTGGTCTATACGGCCGTC
ACGCGTGCCCGCACGCGCGTGCAGGTGATCGGGCCGCGGCGTGTGCTGGCGCAGGCGGTCGCGACGCGCACGCAGCGCGA
CTCGGGGCTCGCGGCACGCGTCGACGAGGCGCTTGCACGGCGCCGCATGGAGGCGTCGCGATGA

Upstream 100 bases:

>100_bases
CCGACTGGCGCAGCGGCGGCGAACCGGCCGGCGTACATGCGCGGCGGCCCGAGCGCGCGCTCGTCGACGCACTCGACCGG
ATGATGGAAGGGGGCCGCGC

Downstream 100 bases:

>100_bases
TGATCCGCTATACGCTCGATCCGGCCGAAGTCGAATGGACGGCCGTGCGCGCGCAGGGCGCGGGCGGGCAGAACGTGAAC
AAGGTGTCGAGCGCGATCCA

Product: exodeoxyribonuclease V, alpha subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 767; Mature: 767

Protein sequence:

>767_residues
MNMNVQDDTLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPAAAARWAARAAFATSRATAGGHVCVALGALAQ
RYEAPLDEVRSALAASGVVAFGTLARGDERPLIVDRHDHLYLSRYFDYERRLADALVAQAGVAAPDEGLAPARLRDSLAR
YFGPATGEVDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRVALAAPTGKAAQRMQEALHARAGDLP
PELAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAG
AVFAELSARPAFTAAARTRIAQALGIDEAAFVAALPVQDEAVPAAPPVSAVARAPAALSASAVAATRKPASRRKVDERQA
SLFDDEPQDDEVSPTSAAPPSAAGPMLTEAGDAGVAGEAPAWIEVDELEWLDAVELPPFDASDSALASVTSILSGESEAA
SATSTPAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRSGDVQAALDALPADDSAAASFHDDAGESLAASTVERLARRFG
AYLDALRDTLAAPVPDPLPLFDALNRFRILCATRSGLRGAEHVNALVAAHVRHAARVPLAVGAHWFTGRPIMVTRNDYAL
GLFNGDIGIALPDAHGVLRVWFRRADGTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTRELVYTAV
TRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVDEALARRRMEASR

Sequences:

>Translated_767_residues
MNMNVQDDTLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPAAAARWAARAAFATSRATAGGHVCVALGALAQ
RYEAPLDEVRSALAASGVVAFGTLARGDERPLIVDRHDHLYLSRYFDYERRLADALVAQAGVAAPDEGLAPARLRDSLAR
YFGPATGEVDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRVALAAPTGKAAQRMQEALHARAGDLP
PELAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAG
AVFAELSARPAFTAAARTRIAQALGIDEAAFVAALPVQDEAVPAAPPVSAVARAPAALSASAVAATRKPASRRKVDERQA
SLFDDEPQDDEVSPTSAAPPSAAGPMLTEAGDAGVAGEAPAWIEVDELEWLDAVELPPFDASDSALASVTSILSGESEAA
SATSTPAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRSGDVQAALDALPADDSAAASFHDDAGESLAASTVERLARRFG
AYLDALRDTLAAPVPDPLPLFDALNRFRILCATRSGLRGAEHVNALVAAHVRHAARVPLAVGAHWFTGRPIMVTRNDYAL
GLFNGDIGIALPDAHGVLRVWFRRADGTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTRELVYTAV
TRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVDEALARRRMEASR
>Mature_767_residues
MNMNVQDDTLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPAAAARWAARAAFATSRATAGGHVCVALGALAQ
RYEAPLDEVRSALAASGVVAFGTLARGDERPLIVDRHDHLYLSRYFDYERRLADALVAQAGVAAPDEGLAPARLRDSLAR
YFGPATGEVDWQRVAAIVALTGRVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRVALAAPTGKAAQRMQEALHARAGDLP
PELAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALAPGARLVLLGDKDQLAAVEAG
AVFAELSARPAFTAAARTRIAQALGIDEAAFVAALPVQDEAVPAAPPVSAVARAPAALSASAVAATRKPASRRKVDERQA
SLFDDEPQDDEVSPTSAAPPSAAGPMLTEAGDAGVAGEAPAWIEVDELEWLDAVELPPFDASDSALASVTSILSGESEAA
SATSTPAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRSGDVQAALDALPADDSAAASFHDDAGESLAASTVERLARRFG
AYLDALRDTLAAPVPDPLPLFDALNRFRILCATRSGLRGAEHVNALVAAHVRHAARVPLAVGAHWFTGRPIMVTRNDYAL
GLFNGDIGIALPDAHGVLRVWFRRADGTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTRELVYTAV
TRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVDEALARRRMEASR

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=264, Percent_Identity=46.2121212121212, Blast_Score=215, Evalue=1e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 80234; Mature: 80234

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMNVQDDTLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPAAAARWAARAAF
CCCCCCCCHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ATSRATAGGHVCVALGALAQRYEAPLDEVRSALAASGVVAFGTLARGDERPLIVDRHDHL
HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCCCCEEEECCCCC
YLSRYFDYERRLADALVAQAGVAAPDEGLAPARLRDSLARYFGPATGEVDWQRVAAIVAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHE
TGRVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRVALAAPTGKAAQRMQEALHARAGDLP
ECEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCC
PELAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALA
HHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHC
PGARLVLLGDKDQLAAVEAGAVFAELSARPAFTAAARTRIAQALGIDEAAFVAALPVQDE
CCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHEEECCCCCC
AVPAAPPVSAVARAPAALSASAVAATRKPASRRKVDERQASLFDDEPQDDEVSPTSAAPP
CCCCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
SAAGPMLTEAGDAGVAGEAPAWIEVDELEWLDAVELPPFDASDSALASVTSILSGESEAA
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHC
SATSTPAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRSGDVQAALDALPADDSAAASFH
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCC
DDAGESLAASTVERLARRFGAYLDALRDTLAAPVPDPLPLFDALNRFRILCATRSGLRGA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEECCCCCCHH
EHVNALVAAHVRHAARVPLAVGAHWFTGRPIMVTRNDYALGLFNGDIGIALPDAHGVLRV
HHHHHHHHHHHHHHHCCCCEECCEEECCCEEEEECCCEEEEEEECCEEEEECCCCHHHHH
WFRRADGTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTRELVYTAV
HHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHH
TRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVDEALARRRMEASR
HHHHHEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNMNVQDDTLEFTGGLVARLPEPADFGIALAEGFARRIGDLARRAGAPAAAARWAARAAF
CCCCCCCCHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
ATSRATAGGHVCVALGALAQRYEAPLDEVRSALAASGVVAFGTLARGDERPLIVDRHDHL
HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCCCCEEEECCCCC
YLSRYFDYERRLADALVAQAGVAAPDEGLAPARLRDSLARYFGPATGEVDWQRVAAIVAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHE
TGRVTIVSGGPGTGKTTTVVGVLACLLDAHPGLRVALAAPTGKAAQRMQEALHARAGDLP
ECEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCC
PELAARLPDTSYTLHRLLGGGGAAGFRHHRDNPLPYDLIVVDEASMIDVALAAHLLDALA
HHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHC
PGARLVLLGDKDQLAAVEAGAVFAELSARPAFTAAARTRIAQALGIDEAAFVAALPVQDE
CCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHEEECCCCCC
AVPAAPPVSAVARAPAALSASAVAATRKPASRRKVDERQASLFDDEPQDDEVSPTSAAPP
CCCCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
SAAGPMLTEAGDAGVAGEAPAWIEVDELEWLDAVELPPFDASDSALASVTSILSGESEAA
CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHC
SATSTPAPAPLADCVVWLERNYRFGLDSPIGRLSLAIRSGDVQAALDALPADDSAAASFH
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCC
DDAGESLAASTVERLARRFGAYLDALRDTLAAPVPDPLPLFDALNRFRILCATRSGLRGA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEECCCCCCHH
EHVNALVAAHVRHAARVPLAVGAHWFTGRPIMVTRNDYALGLFNGDIGIALPDAHGVLRV
HHHHHHHHHHHHHHHCCCCEECCEEECCCEEEEECCCEEEEEEECCEEEEECCCCHHHHH
WFRRADGTARAVSPAALPPHETAFALTVHKSQGSEFDEAALVLPASFGRVLTRELVYTAV
HHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHH
TRARTRVQVIGPRRVLAQAVATRTQRDSGLAARVDEALARRRMEASR
HHHHHEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]