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The map label for this gene is ctrD [H]

Identifier: 78065341

GI number: 78065341

Start: 778108

End: 778761

Strand: Reverse

Name: ctrD [H]

Synonym: Bcep18194_A3867

Alternate gene names: 78065341

Gene position: 778761-778108 (Counterclockwise)

Preceding gene: 78065342

Following gene: 78065332

Centisome position: 21.08

GC content: 45.57

Gene sequence:

>654_bases
ATGATCGAACTCTCCAACGTCACTCGTCGCTACAATACTCGAAATGGTCAACGCACCATCTTGAACAAAGTCAATTTGCG
CGTCTTACGGGGTGAGAAGATTGGCATTCTAGGTGGGAATGGCGCCGGCAAATCGACACTCATTCGACTGATAAGCGGCG
CCGAGCGCCCCGATGAAGGGAAGGTTCGTCGGTCAATGAGCGTATCTTGGCCGCTGGCATTTAGTGGCGGATTTCAAGGC
ACCTTGACAGGATTCGATAATCTGCGATTTATTTGCAGAATTTACAATGCCTCATACGATTCAACACTTCCTTACGTAGA
ATCATTTTCCGAACTCGGCCCGTATTTACGCGAACCGGTTAAAACATATTCGAGCGGGATGCTCGCAAGATACGCATTCT
CCATCTCAATGGCAATTGAATTCGATTGCTTTTTAATCGATGAAGTTATTGCAGTCGGCGACTCCCGATTTCAACAAAAA
TGCAACGAAGAATTATTTGAAAAAAGAAAAGATCGCTCGATGATCATTGTTTCACACGACGCACACCGAATTCGGGAACT
GTGCACTCGCGCGTGCGTGCTTGAGAACGGCAAACTATATCAATTTCCCAACGTTGAAGACGCATACCATTACTATGAAA
GGAAAAAGAAATAA

Upstream 100 bases:

>100_bases
AACCGCATTATGACATCGGCTATGTCGCAGTTCTAAATCTGCTGATTACTTGGGGTGGCCTTGCCGTAGTCGCAGCCGCA
GCCAAGAGGGTAGGAAACAA

Downstream 100 bases:

>100_bases
TTCGCATCACGGACACAAAGAAAAATCCTGCTCCGTTGCAGGCGCCACCATCGAGGTAGTGCCTGCAGTCGGAATCTAAA
TCACAAGAAAATTACTTCCT

Product: ABC transporter, ATPase subunit

Products: NA

Alternate protein names: Capsular-polysaccharide-transporting ATPase [H]

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MIELSNVTRRYNTRNGQRTILNKVNLRVLRGEKIGILGGNGAGKSTLIRLISGAERPDEGKVRRSMSVSWPLAFSGGFQG
TLTGFDNLRFICRIYNASYDSTLPYVESFSELGPYLREPVKTYSSGMLARYAFSISMAIEFDCFLIDEVIAVGDSRFQQK
CNEELFEKRKDRSMIIVSHDAHRIRELCTRACVLENGKLYQFPNVEDAYHYYERKKK

Sequences:

>Translated_217_residues
MIELSNVTRRYNTRNGQRTILNKVNLRVLRGEKIGILGGNGAGKSTLIRLISGAERPDEGKVRRSMSVSWPLAFSGGFQG
TLTGFDNLRFICRIYNASYDSTLPYVESFSELGPYLREPVKTYSSGMLARYAFSISMAIEFDCFLIDEVIAVGDSRFQQK
CNEELFEKRKDRSMIIVSHDAHRIRELCTRACVLENGKLYQFPNVEDAYHYYERKKK
>Mature_217_residues
MIELSNVTRRYNTRNGQRTILNKVNLRVLRGEKIGILGGNGAGKSTLIRLISGAERPDEGKVRRSMSVSWPLAFSGGFQG
TLTGFDNLRFICRIYNASYDSTLPYVESFSELGPYLREPVKTYSSGMLARYAFSISMAIEFDCFLIDEVIAVGDSRFQQK
CNEELFEKRKDRSMIIVSHDAHRIRELCTRACVLENGKLYQFPNVEDAYHYYERKKK

Specific function: Putative ATP-binding protein, and an energy-coupling component of capsule polysaccharide export apparatus [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Escherichia coli, GI1790467, Length=225, Percent_Identity=28, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786398, Length=236, Percent_Identity=26.271186440678, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789751, Length=200, Percent_Identity=26.5, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1788761, Length=221, Percent_Identity=23.9819004524887, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788165, Length=186, Percent_Identity=25.8064516129032, Blast_Score=63, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6325030, Length=190, Percent_Identity=30, Blast_Score=68, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24643672, Length=215, Percent_Identity=26.5116279069767, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007184, Length=190, Percent_Identity=30, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221500365, Length=190, Percent_Identity=30, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: NA

EC number: =3.6.3.38 [H]

Molecular weight: Translated: 24866; Mature: 24866

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELSNVTRRYNTRNGQRTILNKVNLRVLRGEKIGILGGNGAGKSTLIRLISGAERPDEG
CCCCCHHHHHHCCCCCHHHHHHHCCEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCC
KVRRSMSVSWPLAFSGGFQGTLTGFDNLRFICRIYNASYDSTLPYVESFSELGPYLREPV
HHHHHCCCCCCEEECCCCCEEECCHHHHEEHHHHHCCCCCCCCHHHHHHHHHCHHHHHHH
KTYSSGMLARYAFSISMAIEFDCFLIDEVIAVGDSRFQQKCNEELFEKRKDRSMIIVSHD
HHHHCCHHHHHHEEEEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECC
AHRIRELCTRACVLENGKLYQFPNVEDAYHYYERKKK
HHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCC
>Mature Secondary Structure
MIELSNVTRRYNTRNGQRTILNKVNLRVLRGEKIGILGGNGAGKSTLIRLISGAERPDEG
CCCCCHHHHHHCCCCCHHHHHHHCCEEEECCCEEEEEECCCCCHHHHHHHHHCCCCCCCC
KVRRSMSVSWPLAFSGGFQGTLTGFDNLRFICRIYNASYDSTLPYVESFSELGPYLREPV
HHHHHCCCCCCEEECCCCCEEECCHHHHEEHHHHHCCCCCCCCHHHHHHHHHCHHHHHHH
KTYSSGMLARYAFSISMAIEFDCFLIDEVIAVGDSRFQQKCNEELFEKRKDRSMIIVSHD
HHHHCCHHHHHHEEEEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEECC
AHRIRELCTRACVLENGKLYQFPNVEDAYHYYERKKK
HHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]