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The map label for this gene is secD

Identifier: 78065284

GI number: 78065284

Start: 703166

End: 705190

Strand: Reverse

Name: secD

Synonym: Bcep18194_A3808

Alternate gene names: 78065284

Gene position: 705190-703166 (Counterclockwise)

Preceding gene: 78065285

Following gene: 78065283

Centisome position: 19.09

GC content: 66.96

Gene sequence:

>2025_bases
ATGAATCGTTATCCACTCTGGAAATATGTCGTGATGGTCGTGGCGCTCGCCATCGGCCTTCTGTACACATTGCCCAACTT
CTTCGGCGAATCGCCGGCGGTGCAGGTGTCGAGCGGCAAGGCCACGGTCAAGCTCGACTCGACCACGCTGACCCAGGTCG
AATCGGCGCTCGCCTCCGCGCAGATCACGCCGGACGACGTCACCTTCGAGAACACGGCGACCAACGCGAACATCCGCGTG
CGCCTGAAGGACACCGATACGCAGCTGCGCGTCAAGGACCTGCTGCAGAAGTCGCTGAACGCCGACCCGAACGATCCGCA
GTACGTCGTCGCCCTGAACCTGCAGAGCGCGTCGCCGCGCTGGCTGACTGCCCTGCATGCGCTGCCGATGTATCTCGGCC
TCGACCTGCGTGGCGGCGTCCACTTCCTGCTCCAGGTCGACATGACGGGCGCGCTGACGAAGAAGCTCGATTCCGACGCG
TCCGACGCGCGCACGCTGCTGCGCGACAAGAACATCCGCGACGGCGGCGTGAGCCGCGTCGACCAGTCCGTGGTCGTCAA
CTTCAGCGATGCGCAGACGGCGGAAGACGCCCGCAAGGTGCTCGCGCTGTCGATCACCGAACTGCAATGGGCGACCCAGC
CCGGCGGTGGCGGTACGCAAGTCGTCGGCACGTTCACGCCGGCCGTGCAGAAGTCCGTCGAGGACGCCGCGCTCAAGCAG
AACCTGACGACGCTCCACAACCGCGTGAACGAACTCGGCGTGTCCGAGCCGATCCTGCAGCAGCAAGGTAGCGACCGCAT
CGTCGTCGAGCTGCCGGGCGTGCAGGACACCGCGAAGGCGAAGGACATCATCGGCCGCACCGCGACGCTCGAAGCGCGCC
TCGCCGACCCGATCAACACGCACCCGAACCCGAACGATCCGGTGCCGCCGGGTGAAGAGCTGTTCACGCAGGGCAACCAG
GCGCCGGTGCTGCTGAAGAAGGAAGTGATCTTCACGGGCGACCGCATCATCGATGCATCGGCCGGCTTCGACGATCACCA
GCGTCCGTCGGTCAACATCCGCCTCGATTCGGCGGGTGGCCGCTCGGTGCGCGCGGTGTCGCGCGAGAACATCGGCAAGC
CGATGGCGATGGTGCTGTTCGAGAAGGGCAAGGGCGAAGTGCTGACGGTCGCGACGATCCAGTCGGAACTCGGCGACCGC
TTCCAGATCACGGGCCAGCCGACGCCGCAGGCTGCGGCCGACCTCGCGCTGCTGCTGCGCGCCGGTTCGCTCGCGGCTCC
GATGGACATCATCGAGGAACGCACGATCGGCCCGAGCCTCGGCGCCGACAACATCAAGATGGGCGTCCACTCGGTGATCT
GGGGCTTCTGCGCGATCGCCGTGTTCATGATCGCGTACTACATGCTGTTCGGCGTGGTGTCGGTGATCGGCCTGTCGGTG
AACCTGCTGCTGCTCGTCGCCGTGCTGTCGCTGATGCAGGCGACGCTGACGCTGCCCGGTATCGCCGCTATCGCGCTCGC
GCTCGGTATGGCGATCGACGCGAACGTGCTGATCAACGAGCGCGTGCGTGAAGAACTGCGCGCCGGCCAGCCGCCGCAGA
CCGCGATCCAGGCCGGCTACGCGCATGCCTGGGCGACGATTCTCGACTCGAACGTCACGACGCTGATCGCCGGCCTCGCG
CTGCTCGCGTTCGGCTCGGGCCCGGTTCGCGCGTTCGCGATCGTGCACTGCCTCGGTATCCTGACGTCGATGTTCTCCGC
GGTGTTCTTCTCGCGCGGGATCGTCAACCTCTGGTACGGCGGCCGCAAGAAGCTGAAGTCGCTCGCGATCGGCCAGGTGT
GGAAGCCGGAAGGCGCCGCTGCCGCCGCATCGTTCTCCGACGCAGACGAATCGACCGACACCGCACGTGCCGCGAAGCTC
GCCGCGCCCGCCAAGGGCAACGCGCCGCGCGCCGCCGGCAAGCCGCAGCTGCGCAACCGCGCGCAGCAAGGCGTGTCGCC
GAAGAAACCGGGCTCGACCCAATAA

Upstream 100 bases:

>100_bases
CACCGAGCGTCCGGCTCCCCGCGCCGTGCCCGCCTGAGAGAGCGGGCCGCCGCGGCGCCGGACGCGACGCTTTCACGCCA
ACCACCCGTTCGGCTCCCTC

Downstream 100 bases:

>100_bases
GGCCCCGGAGAAGACCATGGAATTTTTCCGCATCCGTAAAGACATTCCGTTCATGCGGCACGCGCTGGTGTTCAACGTGA
TCTCGCTGGTCACGTTCCTC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 674; Mature: 674

Protein sequence:

>674_residues
MNRYPLWKYVVMVVALAIGLLYTLPNFFGESPAVQVSSGKATVKLDSTTLTQVESALASAQITPDDVTFENTATNANIRV
RLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA
SDARTLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLALSITELQWATQPGGGGTQVVGTFTPAVQKSVEDAALKQ
NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQ
APVLLKKEVIFTGDRIIDASAGFDDHQRPSVNIRLDSAGGRSVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVVSVIGLSV
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDANVLINERVREELRAGQPPQTAIQAGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLKSLAIGQVWKPEGAAAAASFSDADESTDTARAAKL
AAPAKGNAPRAAGKPQLRNRAQQGVSPKKPGSTQ

Sequences:

>Translated_674_residues
MNRYPLWKYVVMVVALAIGLLYTLPNFFGESPAVQVSSGKATVKLDSTTLTQVESALASAQITPDDVTFENTATNANIRV
RLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA
SDARTLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLALSITELQWATQPGGGGTQVVGTFTPAVQKSVEDAALKQ
NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQ
APVLLKKEVIFTGDRIIDASAGFDDHQRPSVNIRLDSAGGRSVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVVSVIGLSV
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDANVLINERVREELRAGQPPQTAIQAGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLKSLAIGQVWKPEGAAAAASFSDADESTDTARAAKL
AAPAKGNAPRAAGKPQLRNRAQQGVSPKKPGSTQ
>Mature_674_residues
MNRYPLWKYVVMVVALAIGLLYTLPNFFGESPAVQVSSGKATVKLDSTTLTQVESALASAQITPDDVTFENTATNANIRV
RLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA
SDARTLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLALSITELQWATQPGGGGTQVVGTFTPAVQKSVEDAALKQ
NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQ
APVLLKKEVIFTGDRIIDASAGFDDHQRPSVNIRLDSAGGRSVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDR
FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVVSVIGLSV
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDANVLINERVREELRAGQPPQTAIQAGYAHAWATILDSNVTTLIAGLA
LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLKSLAIGQVWKPEGAAAAASFSDADESTDTARAAKL
AAPAKGNAPRAAGKPQLRNRAQQGVSPKKPGSTQ

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=628, Percent_Identity=45.2229299363057, Blast_Score=515, Evalue=1e-147,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 71729; Mature: 71729

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPLWKYVVMVVALAIGLLYTLPNFFGESPAVQVSSGKATVKLDSTTLTQVESALASA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCHHHHHHHHHHHHC
QITPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPR
CCCCCCCEECCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTLLRDKNIRDGGVSRV
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHC
DQSVVVNFSDAQTAEDARKVLALSITELQWATQPGGGGTQVVGTFTPAVQKSVEDAALKQ
CCEEEEEECCHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCHHHHHHHHHHHHHH
NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT
HHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCC
HPNPNDPVPPGEELFTQGNQAPVLLKKEVIFTGDRIIDASAGFDDHQRPSVNIRLDSAGG
CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEECCCCCCCCCCCEEEEEEECCCC
RSVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR
CEEEHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH
AGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVVSVIGLSV
CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDANVLINERVREELRAGQPPQTAIQAGY
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH
AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGIVNLWYG
HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
GRKKLKSLAIGQVWKPEGAAAAASFSDADESTDTARAAKLAAPAKGNAPRAAGKPQLRNR
CHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHH
AQQGVSPKKPGSTQ
HHHCCCCCCCCCCC
>Mature Secondary Structure
MNRYPLWKYVVMVVALAIGLLYTLPNFFGESPAVQVSSGKATVKLDSTTLTQVESALASA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEECCHHHHHHHHHHHHC
QITPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPR
CCCCCCCEECCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCH
WLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTLLRDKNIRDGGVSRV
HHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHC
DQSVVVNFSDAQTAEDARKVLALSITELQWATQPGGGGTQVVGTFTPAVQKSVEDAALKQ
CCEEEEEECCHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCHHHHHHHHHHHHHH
NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINT
HHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCC
HPNPNDPVPPGEELFTQGNQAPVLLKKEVIFTGDRIIDASAGFDDHQRPSVNIRLDSAGG
CCCCCCCCCCCHHHHCCCCCCCEEEEEEEEEECCEEEECCCCCCCCCCCEEEEEEECCCC
RSVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITGQPTPQAAADLALLLR
CEEEHHHHHCCCCCEEEEEEECCCCCEEEEEEEHHHCCCEEEECCCCCCHHHHHHHHHHH
AGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVVSVIGLSV
CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDANVLINERVREELRAGQPPQTAIQAGY
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHH
AHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGIVNLWYG
HHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
GRKKLKSLAIGQVWKPEGAAAAASFSDADESTDTARAAKLAAPAKGNAPRAAGKPQLRNR
CHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHH
AQQGVSPKKPGSTQ
HHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]