Click here to switch to the map view.

The map label for this gene is ygaD [H]

Identifier: 78065186

GI number: 78065186

Start: 599149

End: 599649

Strand: Reverse

Name: ygaD [H]

Synonym: Bcep18194_A3710

Alternate gene names: 78065186

Gene position: 599649-599149 (Counterclockwise)

Preceding gene: 78065187

Following gene: 78065167

Centisome position: 16.23

GC content: 68.66

Gene sequence:

>501_bases
ATGCCTACCGATTCCGTCGTCCATCAGCTTGCGATTCGCGCAGGCAACAAGTTGCGTGACGAGCACCTGGCGCTCGCCAC
CGCCGAATCCTGCACCGGCGGCATGATCGCCGCCGCGATCACCGACATTTCCGGCAGCAGCCAGTGGTTCGAGCGCGGCT
TCGTCACGTACTCGAACCAGGCCAAGATCGAGATGATCGGCGTGCCGCCCGACCTGATCGACAAGCATGGCGCCGTCAGC
GAGCCCGTCGCGCGCGCGATGGCCGAAGGCGCGCTGCGCAACAGCCGCGCGCAGGTCGCGCTGTCCGTCACCGGCATCGC
GGGCCCCGCAGGCGGCAGCGAGAAGAAGCCGGTCGGCACCGTGTCGTTCGGCTGGAGCAACCGGCTGCATACCGACGTCG
AGACGCTCGTGTTCAAGGGCGACCGCGAACAGATCCGCACGCAGGCGGCCGCGCATGCGCTGCGCGGGCTGCTGAAGCTG
CTCGACGAGCGCGAGGGCTGA

Upstream 100 bases:

>100_bases
GTCGACGACCTGGTCGCTGCGTTCATGACGCTGCTCGTGATCGCCCTTTGGCGCTCCGTCGTCGGCTGACCGATTTCCCG
ACTCCCGTTTCCCGACGCGT

Downstream 100 bases:

>100_bases
TCGAGCCGGGGGGCGCCACGCCGCGCGCCCCCGCTTGCCCGCTCACTGGATCGCGTCGGGCTTCACGACGATCCAGTTCT
TGTCCGCCGTCACCGGCAGG

Product: CinA-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MPTDSVVHQLAIRAGNKLRDEHLALATAESCTGGMIAAAITDISGSSQWFERGFVTYSNQAKIEMIGVPPDLIDKHGAVS
EPVARAMAEGALRNSRAQVALSVTGIAGPAGGSEKKPVGTVSFGWSNRLHTDVETLVFKGDREQIRTQAAAHALRGLLKL
LDEREG

Sequences:

>Translated_166_residues
MPTDSVVHQLAIRAGNKLRDEHLALATAESCTGGMIAAAITDISGSSQWFERGFVTYSNQAKIEMIGVPPDLIDKHGAVS
EPVARAMAEGALRNSRAQVALSVTGIAGPAGGSEKKPVGTVSFGWSNRLHTDVETLVFKGDREQIRTQAAAHALRGLLKL
LDEREG
>Mature_165_residues
PTDSVVHQLAIRAGNKLRDEHLALATAESCTGGMIAAAITDISGSSQWFERGFVTYSNQAKIEMIGVPPDLIDKHGAVSE
PVARAMAEGALRNSRAQVALSVTGIAGPAGGSEKKPVGTVSFGWSNRLHTDVETLVFKGDREQIRTQAAAHALRGLLKLL
DEREG

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=158, Percent_Identity=53.7974683544304, Blast_Score=163, Evalue=6e-42,
Organism=Escherichia coli, GI1787818, Length=145, Percent_Identity=35.8620689655172, Blast_Score=101, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17602; Mature: 17471

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTDSVVHQLAIRAGNKLRDEHLALATAESCTGGMIAAAITDISGSSQWFERGFVTYSNQ
CCCHHHHHHHHHHCCCCCCHHHHHEEECCCCCCCCHHHHHHCCCCCHHHHHCCCEEECCC
AKIEMIGVPPDLIDKHGAVSEPVARAMAEGALRNSRAQVALSVTGIAGPAGGSEKKPVGT
CEEEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEE
VSFGWSNRLHTDVETLVFKGDREQIRTQAAAHALRGLLKLLDEREG
EECCCCCCCCCCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PTDSVVHQLAIRAGNKLRDEHLALATAESCTGGMIAAAITDISGSSQWFERGFVTYSNQ
CCHHHHHHHHHHCCCCCCHHHHHEEECCCCCCCCHHHHHHCCCCCHHHHHCCCEEECCC
AKIEMIGVPPDLIDKHGAVSEPVARAMAEGALRNSRAQVALSVTGIAGPAGGSEKKPVGT
CEEEEECCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEE
VSFGWSNRLHTDVETLVFKGDREQIRTQAAAHALRGLLKLLDEREG
EECCCCCCCCCCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]