| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is 78065090
Identifier: 78065090
GI number: 78065090
Start: 488150
End: 489949
Strand: Direct
Name: 78065090
Synonym: Bcep18194_A3614
Alternate gene names: NA
Gene position: 488150-489949 (Clockwise)
Preceding gene: 78065089
Following gene: 78065091
Centisome position: 13.21
GC content: 67.61
Gene sequence:
>1800_bases ATGACCCAGCCGATCCGCTATTCGATTGTCCCGAAAGATCTTGCCGCGCACCTGTTCGAAGTGTCGGTGACGGTCACCGA TCCCGACCCCGAAGGCCAGCGCTTTTCGCTGCCGGTGTGGATCCCGGGGAGCTACCTCGTGCGCGAGTTCGCGCGCAACA TCGTGACGCTCGGCGCATTCAACGATGCGGGCCGCAAGGTGCGGATCGCGAAGACCGACAAGCACACGTGGCAGGCCGCG CCCGTGAGCGGCACGCTGACGCTGCGCTACGACGTGTATGCATGGGACCTGTCGGTGCGCTCCGCGTATCTCGACGAATC GGGCGGCTTCTTCAACGCGACGGCCGTGTTCCTGAGCGTCGCCGGCCGTGAGGACGCGCCGTGTGAAGTCGACATCGCGA AGCCGGCCGGCGCGGCATTCCGCGCGTGGCGTGTCGGCACGTCGCTGCCCGAGGGGCGCGGCACCAAGCGTTATGCGTTC GGCGCCTACCGCGCGTCGAACTACGACGAGCTCTCCGACCATCCGGTGACGATCGGCGAATTCGCGCTCGCGACGTTCGA TGCGCACGGTGTGCCGCACGACATCGTGATCGCGGGGCGCGTGACGCAGCTCGACATGGAGCGCCTGCGCGCCGACCTGA AGCGCGTGTGTGAAGCACAGATCGCGCTGTTCGAGCCGAAATCGAAGAAGGCGCCGATGGACCGCTACGTGTTCATGACG CTGGCGGTCAGCGACGGCTACGGCGGCCTCGAGCACCGCGCGTCGACCGCGCTGATCTGCAACCGCACCGACCTGCCGGT GAAGGGGCGGCCCGAAACGACGGAAGGCTATCGCACGTATCTCGGTCTCTGCAGCCACGAGTACTTCCACACGTGGAACG TGAAGCGCATCAAGCCGGCGGCGTTCGTGCCGTACGACCTGTCGAAGGAAAACTACACGTCGCTGCTGTGGCTGTTCGAA GGCTTCACGTCGTATTACGACGACCTGATGCTGGTGCGCAGCGGGCTGATGTCGCAGGACGAATATTTCGCGGCGCTCGG CCGCACCGTCGGCGGTGTGCTGCGCGGCACGGGGCGCCTGAAGCAGAGCGTCGCCGACAGCTCGTTCGACGCATGGATCA AGTACTACCGCCAGGACGAGAACGCGACCAACGCGATCGTCAGCTACTACACGAAGGGTTCGCTCGTCGCGCTCGCCTTC GATCTCGCGATCCGCGCGCAGACGCGCAACAGGAAGTCGCTCGACGACGTGATGCGCCTGCTGTGGCAGCGCTACGGCCG CGACTTCTACCGCGGCAAGCAGGCGGGCGTCGAGGAAGACGAAGTCGAGGCGCTGATCGAAGCGGCGACGGGCGTTGCGC TCGGCCGTCTGTTCGCCGATGCCGTGCACGGCACGCGCGACCTGCCGCTCGCCGAACTGCTTGCACCGTTCGGCGTGACG CTCGCGCCCGATGTCGTGAATGGCACGACCGCGAAGCCGACGATCGGCGCGCGCCTGCGCGGCGGCGCGGACTGCACGTT CGCGGCTGTCTACGAAGGCGGCGCCGCACATCGCGCGGGGCTGTCGGCCGGCGACACGCTGATCGCGGTCGACGGGCTGC GCGTCACGGGCACCAACCTCGACGCACTGCTCGCGCGCTACCGGCCGGGTGACAAGGTCGAGGTTCACGCGTTCCGGCGC GACGAGCTGCGCACCGCGAAACTGAAGCTCGACGGCCCGGAAGTCACGCGCTACCGGCTGACGGCGGCGGCGAAGCCGGC TGCGGTCTCGAAGGCCCGGGAGGCTTGGCTGAAGGGTTGA
Upstream 100 bases:
>100_bases ACCACACGCCGGGCCGCATGGCCTGGCCAGCGAGGGGCGCCCGCATCTGCCGGCGCCTCTCTTCGTTTCCGCCGCCGTAT TCGACCGACCGATTGCCACG
Downstream 100 bases:
>100_bases GCGGTCTGAAGCGGGTATCGGGGCGGGATCAAGGATTGTTCTGCTGCTGCAACAATCCGTCGCCTTGAACCCGCTTTTTC GCGGTCATGCGGCCACGCAC
Product: peptidase M61
Products: NA
Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Trypsin-Like Serine Protease; Metallopeptidase; Aminopeptidase N Family Protein; PDZ Domain-Containing Protein; Protease With C-Terminal PDZ Domain-Containing Protein; Glycyl Aminopeptidase; PDZ/DHR/GLGFPeptidase M; Signaling Protein; M61 Glycyl Aminopeptidase Protein; PDZ Domain Protein; M61 Glycyl Aminopeptidase Family Protein; Protease With C-Terminal PDZ Domain
Number of amino acids: Translated: 599; Mature: 598
Protein sequence:
>599_residues MTQPIRYSIVPKDLAAHLFEVSVTVTDPDPEGQRFSLPVWIPGSYLVREFARNIVTLGAFNDAGRKVRIAKTDKHTWQAA PVSGTLTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAGAAFRAWRVGTSLPEGRGTKRYAF GAYRASNYDELSDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVCEAQIALFEPKSKKAPMDRYVFMT LAVSDGYGGLEHRASTALICNRTDLPVKGRPETTEGYRTYLGLCSHEYFHTWNVKRIKPAAFVPYDLSKENYTSLLWLFE GFTSYYDDLMLVRSGLMSQDEYFAALGRTVGGVLRGTGRLKQSVADSSFDAWIKYYRQDENATNAIVSYYTKGSLVALAF DLAIRAQTRNRKSLDDVMRLLWQRYGRDFYRGKQAGVEEDEVEALIEAATGVALGRLFADAVHGTRDLPLAELLAPFGVT LAPDVVNGTTAKPTIGARLRGGADCTFAAVYEGGAAHRAGLSAGDTLIAVDGLRVTGTNLDALLARYRPGDKVEVHAFRR DELRTAKLKLDGPEVTRYRLTAAAKPAAVSKAREAWLKG
Sequences:
>Translated_599_residues MTQPIRYSIVPKDLAAHLFEVSVTVTDPDPEGQRFSLPVWIPGSYLVREFARNIVTLGAFNDAGRKVRIAKTDKHTWQAA PVSGTLTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAGAAFRAWRVGTSLPEGRGTKRYAF GAYRASNYDELSDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVCEAQIALFEPKSKKAPMDRYVFMT LAVSDGYGGLEHRASTALICNRTDLPVKGRPETTEGYRTYLGLCSHEYFHTWNVKRIKPAAFVPYDLSKENYTSLLWLFE GFTSYYDDLMLVRSGLMSQDEYFAALGRTVGGVLRGTGRLKQSVADSSFDAWIKYYRQDENATNAIVSYYTKGSLVALAF DLAIRAQTRNRKSLDDVMRLLWQRYGRDFYRGKQAGVEEDEVEALIEAATGVALGRLFADAVHGTRDLPLAELLAPFGVT LAPDVVNGTTAKPTIGARLRGGADCTFAAVYEGGAAHRAGLSAGDTLIAVDGLRVTGTNLDALLARYRPGDKVEVHAFRR DELRTAKLKLDGPEVTRYRLTAAAKPAAVSKAREAWLKG >Mature_598_residues TQPIRYSIVPKDLAAHLFEVSVTVTDPDPEGQRFSLPVWIPGSYLVREFARNIVTLGAFNDAGRKVRIAKTDKHTWQAAP VSGTLTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAGAAFRAWRVGTSLPEGRGTKRYAFG AYRASNYDELSDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVCEAQIALFEPKSKKAPMDRYVFMTL AVSDGYGGLEHRASTALICNRTDLPVKGRPETTEGYRTYLGLCSHEYFHTWNVKRIKPAAFVPYDLSKENYTSLLWLFEG FTSYYDDLMLVRSGLMSQDEYFAALGRTVGGVLRGTGRLKQSVADSSFDAWIKYYRQDENATNAIVSYYTKGSLVALAFD LAIRAQTRNRKSLDDVMRLLWQRYGRDFYRGKQAGVEEDEVEALIEAATGVALGRLFADAVHGTRDLPLAELLAPFGVTL APDVVNGTTAKPTIGARLRGGADCTFAAVYEGGAAHRAGLSAGDTLIAVDGLRVTGTNLDALLARYRPGDKVEVHAFRRD ELRTAKLKLDGPEVTRYRLTAAAKPAAVSKAREAWLKG
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65990; Mature: 65859
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQPIRYSIVPKDLAAHLFEVSVTVTDPDPEGQRFSLPVWIPGSYLVREFARNIVTLGAF CCCCEEEEECCHHHHCEEEEEEEEEECCCCCCCEEEEEEEECHHHHHHHHHHHEEEEECC NDAGRKVRIAKTDKHTWQAAPVSGTLTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSV CCCCCEEEEEECCCCCEEECCCCCEEEEEEEEEEEEEEHHHHHCCCCCCEEEHEEEEEEE AGREDAPCEVDIAKPAGAAFRAWRVGTSLPEGRGTKRYAFGAYRASNYDELSDHPVTIGE CCCCCCCCEEEECCCCCCHHEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEHHH FALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVCEAQIALFEPKSKKAPMDRYVFMT HEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEE LAVSDGYGGLEHRASTALICNRTDLPVKGRPETTEGYRTYLGLCSHEYFHTWNVKRIKPA EEEECCCCCCHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCEEECCC AFVPYDLSKENYTSLLWLFEGFTSYYDDLMLVRSGLMSQDEYFAALGRTVGGVLRGTGRL EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHH KQSVADSSFDAWIKYYRQDENATNAIVSYYTKGSLVALAFDLAIRAQTRNRKSLDDVMRL HHHHCCCHHHHHHHHHHCCCCHHHHHHEEECCCCEEEEEEEHHEEECCCCCCCHHHHHHH LWQRYGRDFYRGKQAGVEEDEVEALIEAATGVALGRLFADAVHGTRDLPLAELLAPFGVT HHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCE LAPDVVNGTTAKPTIGARLRGGADCTFAAVYEGGAAHRAGLSAGDTLIAVDGLRVTGTNL ECCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCHHHCCCCCCCEEEEECCEEEECCCH DALLARYRPGDKVEVHAFRRDELRTAKLKLDGPEVTRYRLTAAAKPAAVSKAREAWLKG HHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCC >Mature Secondary Structure TQPIRYSIVPKDLAAHLFEVSVTVTDPDPEGQRFSLPVWIPGSYLVREFARNIVTLGAF CCCEEEEECCHHHHCEEEEEEEEEECCCCCCCEEEEEEEECHHHHHHHHHHHEEEEECC NDAGRKVRIAKTDKHTWQAAPVSGTLTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSV CCCCCEEEEEECCCCCEEECCCCCEEEEEEEEEEEEEEHHHHHCCCCCCEEEHEEEEEEE AGREDAPCEVDIAKPAGAAFRAWRVGTSLPEGRGTKRYAFGAYRASNYDELSDHPVTIGE CCCCCCCCEEEECCCCCCHHEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEHHH FALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVCEAQIALFEPKSKKAPMDRYVFMT HEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEE LAVSDGYGGLEHRASTALICNRTDLPVKGRPETTEGYRTYLGLCSHEYFHTWNVKRIKPA EEEECCCCCCHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCEEECCC AFVPYDLSKENYTSLLWLFEGFTSYYDDLMLVRSGLMSQDEYFAALGRTVGGVLRGTGRL EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHH KQSVADSSFDAWIKYYRQDENATNAIVSYYTKGSLVALAFDLAIRAQTRNRKSLDDVMRL HHHHCCCHHHHHHHHHHCCCCHHHHHHEEECCCCEEEEEEEHHEEECCCCCCCHHHHHHH LWQRYGRDFYRGKQAGVEEDEVEALIEAATGVALGRLFADAVHGTRDLPLAELLAPFGVT HHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCE LAPDVVNGTTAKPTIGARLRGGADCTFAAVYEGGAAHRAGLSAGDTLIAVDGLRVTGTNL ECCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCHHHCCCCCCCEEEEECCEEEECCCH DALLARYRPGDKVEVHAFRRDELRTAKLKLDGPEVTRYRLTAAAKPAAVSKAREAWLKG HHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA