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The map label for this gene is visC [H]

Identifier: 78065088

GI number: 78065088

Start: 486049

End: 487227

Strand: Direct

Name: visC [H]

Synonym: Bcep18194_A3612

Alternate gene names: 78065088

Gene position: 486049-487227 (Clockwise)

Preceding gene: 78065086

Following gene: 78065089

Centisome position: 13.16

GC content: 70.91

Gene sequence:

>1179_bases
ATGCCCGCCATGACTGCCCACCACACCTTCGACGTCGCCGTGGTCGGCGGCGGGCTCGTCGGCAAGACGGCCGCGCTCGC
GCTGACCCAGTCCGGCTACAAGACAGCCTTGCTCGCCCAGCCGGCCACGCCGCGCCCCGCCGATCTCGCATTCGACACGC
GCGTCTACGCACTGTCCACCAGTTCGCAGGCGCTGCTCGAGCGGCTGCGGGTCTGGCAGGCGCTCGATCACAGCCGGCTC
GCACCGGTCTACGACATGCGCGTGTACGGCGATGCCCACGCGGAACTGCATTTCTCCGCGTATCAGGCTTCCGTGCCGCA
GCTCGCGTGGATCGCTGAATCGTCGCTGGTCGAGGCGTCGCTCGACGCCGCGCTGCGGTTCCAGCCGAATCTCACGTGGT
TCGACGCGCGCGCACAGGGCTTCGACGTGCGCGACGACGCGGCCGTGCTCACGCTGTCGTCGGGGCAGGTGCTGGAAGCG
GACCTCATCGTCGGCGCCGATGGCGCGCATTCATGGGTGCGCTCGCAAATGGGGGCCAAAGTCGAGCGACGCGACTACCG
GCAAACCGGCGTCGTCGCGAACTTCAAGGCGTCGCTGCCGCACCGCGAGACGGCCTACCAGTGGTTCCACGAAGGCGAGA
TCGTCGCGCTGTTGCCGCTGCCGGACGGCCATGTGTCGCTCGTCTGGTCCGCGCACACCGCGCATGCGGACGAATTGCTC
GCGCTCGACCCGGCGCAGCTCGCGGCCGAGGTCGAGCGCGTGTCGCATGGGCAGGTCGGCACCCTCGACTGCGTGACGCC
GGCCGCCGGCTTCCCGCTGGCGCTGCAGACGGTCGACAAGCTGATCGCGCCGCGCGTCGCGCTCGTCGGCGATGCCGCGC
ACCTGATCCACCCGCTCGCGGGGCAGGGGATGAACCTCGGGCTGCGCGACGTCGCGGCGCTTGCCGACGCGATCGCCGGC
AAGGAAAGCTTCCGCAACCTCGGCGATACGGTGCTGCTGCGTCGCTACGAGCGTTCGCGCCGCGAGGACATCCGTGCGCT
GATGGTCGCGACCGACGGGCTGCAGCGGCTGTTCGCGGTGCCGGGCTCGCTCGCGAAGGCCGTGCGCAACGCGGGCATGG
CCTTCGTCGGCGCGCAGCCGCTCGTGAAGCGCTGGCTCGTGTCGGCCGCGCTCGGCTGA

Upstream 100 bases:

>100_bases
AACGGCCGATGCGACGGGCCGCCACGCCGCGGCATCGGCCTGCGATTCTGCTGATTTCCCGCAAAGTCCGGCCGCGTAAG
GGTTTGGCCCCGCGGCTATA

Downstream 100 bases:

>100_bases
TCGAACCTTCCGCCGCTTCGCCGGTCGGACACGGTTCCGTTACGGCGTACACTGTGCCGTGCACACCGATTGAGCTGAAG
GAAGATTTCGATGAAAAAAA

Product: ubiquinone biosynthesis hydroxylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MPAMTAHHTFDVAVVGGGLVGKTAALALTQSGYKTALLAQPATPRPADLAFDTRVYALSTSSQALLERLRVWQALDHSRL
APVYDMRVYGDAHAELHFSAYQASVPQLAWIAESSLVEASLDAALRFQPNLTWFDARAQGFDVRDDAAVLTLSSGQVLEA
DLIVGADGAHSWVRSQMGAKVERRDYRQTGVVANFKASLPHRETAYQWFHEGEIVALLPLPDGHVSLVWSAHTAHADELL
ALDPAQLAAEVERVSHGQVGTLDCVTPAAGFPLALQTVDKLIAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADAIAG
KESFRNLGDTVLLRRYERSRREDIRALMVATDGLQRLFAVPGSLAKAVRNAGMAFVGAQPLVKRWLVSAALG

Sequences:

>Translated_392_residues
MPAMTAHHTFDVAVVGGGLVGKTAALALTQSGYKTALLAQPATPRPADLAFDTRVYALSTSSQALLERLRVWQALDHSRL
APVYDMRVYGDAHAELHFSAYQASVPQLAWIAESSLVEASLDAALRFQPNLTWFDARAQGFDVRDDAAVLTLSSGQVLEA
DLIVGADGAHSWVRSQMGAKVERRDYRQTGVVANFKASLPHRETAYQWFHEGEIVALLPLPDGHVSLVWSAHTAHADELL
ALDPAQLAAEVERVSHGQVGTLDCVTPAAGFPLALQTVDKLIAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADAIAG
KESFRNLGDTVLLRRYERSRREDIRALMVATDGLQRLFAVPGSLAKAVRNAGMAFVGAQPLVKRWLVSAALG
>Mature_391_residues
PAMTAHHTFDVAVVGGGLVGKTAALALTQSGYKTALLAQPATPRPADLAFDTRVYALSTSSQALLERLRVWQALDHSRLA
PVYDMRVYGDAHAELHFSAYQASVPQLAWIAESSLVEASLDAALRFQPNLTWFDARAQGFDVRDDAAVLTLSSGQVLEAD
LIVGADGAHSWVRSQMGAKVERRDYRQTGVVANFKASLPHRETAYQWFHEGEIVALLPLPDGHVSLVWSAHTAHADELLA
LDPAQLAAEVERVSHGQVGTLDCVTPAAGFPLALQTVDKLIAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADAIAGK
ESFRNLGDTVLLRRYERSRREDIRALMVATDGLQRLFAVPGSLAKAVRNAGMAFVGAQPLVKRWLVSAALG

Specific function: Not yet known [H]

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiH/COQ6 family [H]

Homologues:

Organism=Homo sapiens, GI32967305, Length=385, Percent_Identity=27.5324675324675, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI32967307, Length=276, Percent_Identity=31.1594202898551, Blast_Score=119, Evalue=6e-27,
Organism=Escherichia coli, GI1789273, Length=390, Percent_Identity=32.8205128205128, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1786883, Length=398, Percent_Identity=33.9195979899498, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1789274, Length=370, Percent_Identity=31.8918918918919, Blast_Score=158, Evalue=5e-40,
Organism=Caenorhabditis elegans, GI25146631, Length=443, Percent_Identity=29.3453724604966, Blast_Score=139, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6321694, Length=460, Percent_Identity=25, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19920760, Length=441, Percent_Identity=31.2925170068027, Blast_Score=142, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042
- InterPro:   IPR018168
- InterPro:   IPR010971 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 42075; Mature: 41944

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS01304 UBIH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAMTAHHTFDVAVVGGGLVGKTAALALTQSGYKTALLAQPATPRPADLAFDTRVYALST
CCCCCCCCEEEEEEECCCCHHHHHHEEEECCCCCEEEEECCCCCCCCCEEECCEEEEECC
SSQALLERLRVWQALDHSRLAPVYDMRVYGDAHAELHFSAYQASVPQLAWIAESSLVEAS
CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEHHHCCCCCEEHHHHHHHHHHH
LDAALRFQPNLTWFDARAQGFDVRDDAAVLTLSSGQVLEADLIVGADGAHSWVRSQMGAK
HCCEEEECCCCEEEECCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCHHHHHHHHHCCH
VERRDYRQTGVVANFKASLPHRETAYQWFHEGEIVALLPLPDGHVSLVWSAHTAHADELL
HHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCCEE
ALDPAQLAAEVERVSHGQVGTLDCVTPAAGFPLALQTVDKLIAPRVALVGDAAHLIHPLA
EECHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCHHEECCHHHHHHHHC
GQGMNLGLRDVAALADAIAGKESFRNLGDTVLLRRYERSRREDIRALMVATDGLQRLFAV
CCCCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGSLAKAVRNAGMAFVGAQPLVKRWLVSAALG
CHHHHHHHHHCCEEEECCHHHHHHHHHHHHCC
>Mature Secondary Structure 
PAMTAHHTFDVAVVGGGLVGKTAALALTQSGYKTALLAQPATPRPADLAFDTRVYALST
CCCCCCCEEEEEEECCCCHHHHHHEEEECCCCCEEEEECCCCCCCCCEEECCEEEEECC
SSQALLERLRVWQALDHSRLAPVYDMRVYGDAHAELHFSAYQASVPQLAWIAESSLVEAS
CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEHHHCCCCCEEHHHHHHHHHHH
LDAALRFQPNLTWFDARAQGFDVRDDAAVLTLSSGQVLEADLIVGADGAHSWVRSQMGAK
HCCEEEECCCCEEEECCCCCCCCCCCCEEEEECCCCEEEEEEEEECCCHHHHHHHHHCCH
VERRDYRQTGVVANFKASLPHRETAYQWFHEGEIVALLPLPDGHVSLVWSAHTAHADELL
HHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCEEEEEECCCCCCCCEE
ALDPAQLAAEVERVSHGQVGTLDCVTPAAGFPLALQTVDKLIAPRVALVGDAAHLIHPLA
EECHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCHHEECCHHHHHHHHC
GQGMNLGLRDVAALADAIAGKESFRNLGDTVLLRRYERSRREDIRALMVATDGLQRLFAV
CCCCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PGSLAKAVRNAGMAFVGAQPLVKRWLVSAALG
CHHHHHHHHHCCEEEECCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on paired donors, with incorporation or reduction of molecular oxygen; With NADH2 or NADPH2 as one donor, and incorporation of one atom of oxygen [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1339425; 9278503 [H]