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The map label for this gene is ltrA [H]

Identifier: 78065057

GI number: 78065057

Start: 452612

End: 453532

Strand: Direct

Name: ltrA [H]

Synonym: Bcep18194_A3581

Alternate gene names: 78065057

Gene position: 452612-453532 (Clockwise)

Preceding gene: 78065054

Following gene: 78065059

Centisome position: 12.25

GC content: 73.94

Gene sequence:

>921_bases
ATGGACGATTTCCTTTCCCCGCATCTGGCGCTGTTCGTCGACGTGGTCGACCAGCAGAGCTTCTCGGCGGCCGCGCGCCG
GCTGGGTGTTGCCGCGTCGTCGGTCACGCGGCGCATCGACCGGCTCGAGACGCAGCTCGGCATCCGTCTCCTGCATCGCA
CCACGCATGCGCTGCGGCCGACCGAGGCCGGGCAGCTGCTGTACGGGCGCGCGACGCGGATGCTGGCCGAGCTGCGCGGC
CTGCAGGAGGATCTGCACAGCCAGCACGCCGAGCCGAGCGGGCTGCTGCGCGTCGACTGCCCGGCGCCGTTCGGCCGCCG
GCACCTGATGGCCGCGCTGGCCGCGTTCATGCAGCGTCATCCGGCGCTGCAGGTCGACCTGGTGCTGACCGACAGCATGG
TCGACCTGCAGGGCGCGCGGCTCGGCTCCGACGTCGATCTCGCGGTGCGCATCGGCCCGCTCGAGGACACGCGCTTCGTC
GCGACCGTGCTGGCGCCGCAGCGGCGCGTGCTGTGCGCGAGCGCGGCGTATCTCGCGCGGCGCGGCGAGCCCGAGTCGCC
CGACGCGCTTGCCGGCCACGACTGTCTCGCATGGCACGGTGCGCCGCCGCCCGGTGCGTGGCGCTTTGGCGAGCGCCGCC
ACGTGCCGGCGCAGCCGCGGTTTCGCAGCAATCATTCGGAAGCGTTGCTCGAAGCCGCGATCGACGGGCTCGGCCTCGCG
CACCTGCCGACCTGGCTCGCGGGCGATGCGCTGCGCGACGGACGCTTGCGCGCGGTGCTGCCGGAGTTCGCGGCGGCGCC
TGAGCCGGCGACGATCCACGTGTTGCGCCAGCAGGCGCGCGGCACCGCACGCGCGTCGCGGCTCGTCGCGTTCCTCGCGA
CGTGGTTCGCGCAACCGGCGTGGGATGCCGCGTGGGCATGA

Upstream 100 bases:

>100_bases
AAAGGATGAATGCAGTCTAGTCGGCCCGGTTTGACGCGGAAACGTGCAAAGGCGGATGATTGTTTTGCGATAGACGCATA
GCCAAATCCAAAGGCCCCGA

Downstream 100 bases:

>100_bases
CGGCGGGCGGGTGCCCGTGCCGAAAGAAAAAAGGGCCTCGCATGCGAGGCCCGTCAAAGGTCGGAGAAGCCGGTACGCCG
GCCGGCAGCCGCAGGCTGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MDDFLSPHLALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLLYGRATRMLAELRG
LQEDLHSQHAEPSGLLRVDCPAPFGRRHLMAALAAFMQRHPALQVDLVLTDSMVDLQGARLGSDVDLAVRIGPLEDTRFV
ATVLAPQRRVLCASAAYLARRGEPESPDALAGHDCLAWHGAPPPGAWRFGERRHVPAQPRFRSNHSEALLEAAIDGLGLA
HLPTWLAGDALRDGRLRAVLPEFAAAPEPATIHVLRQQARGTARASRLVAFLATWFAQPAWDAAWA

Sequences:

>Translated_306_residues
MDDFLSPHLALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLLYGRATRMLAELRG
LQEDLHSQHAEPSGLLRVDCPAPFGRRHLMAALAAFMQRHPALQVDLVLTDSMVDLQGARLGSDVDLAVRIGPLEDTRFV
ATVLAPQRRVLCASAAYLARRGEPESPDALAGHDCLAWHGAPPPGAWRFGERRHVPAQPRFRSNHSEALLEAAIDGLGLA
HLPTWLAGDALRDGRLRAVLPEFAAAPEPATIHVLRQQARGTARASRLVAFLATWFAQPAWDAAWA
>Mature_306_residues
MDDFLSPHLALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRPTEAGQLLYGRATRMLAELRG
LQEDLHSQHAEPSGLLRVDCPAPFGRRHLMAALAAFMQRHPALQVDLVLTDSMVDLQGARLGSDVDLAVRIGPLEDTRFV
ATVLAPQRRVLCASAAYLARRGEPESPDALAGHDCLAWHGAPPPGAWRFGERRHVPAQPRFRSNHSEALLEAAIDGLGLA
HLPTWLAGDALRDGRLRAVLPEFAAAPEPATIHVLRQQARGTARASRLVAFLATWFAQPAWDAAWA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=298, Percent_Identity=32.2147651006711, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1789639, Length=270, Percent_Identity=30.3703703703704, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1786401, Length=253, Percent_Identity=32.4110671936759, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=34.1216216216216, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=30.952380952381, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1787128, Length=268, Percent_Identity=29.4776119402985, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787589, Length=263, Percent_Identity=30.4182509505703, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787601, Length=164, Percent_Identity=25.609756097561, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789173, Length=246, Percent_Identity=28.8617886178862, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788706, Length=230, Percent_Identity=25.2173913043478, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788481, Length=254, Percent_Identity=26.3779527559055, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33442; Mature: 33442

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDFLSPHLALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAGQLLYGRATRMLAELRGLQEDLHSQHAEPSGLLRVDCPAPFGRRHLMAALAAFMQRH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
PALQVDLVLTDSMVDLQGARLGSDVDLAVRIGPLEDTRFVATVLAPQRRVLCASAAYLAR
CCEEEEEEEECCHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHH
RGEPESPDALAGHDCLAWHGAPPPGAWRFGERRHVPAQPRFRSNHSEALLEAAIDGLGLA
CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
HLPTWLAGDALRDGRLRAVLPEFAAAPEPATIHVLRQQARGTARASRLVAFLATWFAQPA
HHHHHHHCCHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
WDAAWA
CCCCCC
>Mature Secondary Structure
MDDFLSPHLALFVDVVDQQSFSAAARRLGVAASSVTRRIDRLETQLGIRLLHRTTHALRP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAGQLLYGRATRMLAELRGLQEDLHSQHAEPSGLLRVDCPAPFGRRHLMAALAAFMQRH
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
PALQVDLVLTDSMVDLQGARLGSDVDLAVRIGPLEDTRFVATVLAPQRRVLCASAAYLAR
CCEEEEEEEECCHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHH
RGEPESPDALAGHDCLAWHGAPPPGAWRFGERRHVPAQPRFRSNHSEALLEAAIDGLGLA
CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH
HLPTWLAGDALRDGRLRAVLPEFAAAPEPATIHVLRQQARGTARASRLVAFLATWFAQPA
HHHHHHHCCHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
WDAAWA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]