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The map label for this gene is yadH [H]

Identifier: 78064996

GI number: 78064996

Start: 386465

End: 387220

Strand: Direct

Name: yadH [H]

Synonym: Bcep18194_A3519

Alternate gene names: 78064996

Gene position: 386465-387220 (Clockwise)

Preceding gene: 78064995

Following gene: 78064997

Centisome position: 10.46

GC content: 62.04

Gene sequence:

>756_bases
ATGAGCGGGTTTCAAACGCTGTTCTACAAGGAACTGCTGCGTTTCTGGAAGGTGTCGTTTCAGACGGTGTGCGCACCGAT
CGTCACGGCGCTGCTGTATCTGACGATTTTCGGCCACGCGCTGTCGGGCCGCGTCGAGGTCTATCCGGGCGTCGAGTACG
TGAGCTTTCTCGTGCCGGGCCTCGTGATGATGAGCGTGCTGCAGAACGCGTTCGCGAACAGCTCGTCGTCGCTGATCCAG
TCGAAGATCACCGGCAACCTCGTGTTCATGCTGCTGCCGCCGCTGTCGTATCGCGACATCTTCGGCGCGTACGTGCTCGC
GTCCGTGGTGCGCGGCCTCGCGGTCGGCACGGGCGTGTTCGTCGTGACGATCTGGTTTATCCCGATGCATTTCGCGGCGC
CGCTGTTCATCATTGCGTTCGCGCTGCTCGGCTCGGCGATCCTCGGCACGCTCGGCCTGATCGCCGGGATCTGGGCCGAG
AAGTTCGACCAGCTCGCCGCGTTCCAGAACTTCCTGATCATGCCGCTGACGTTCCTGTCCGGCGTGTTCTATTCGACGCA
CTCGCTGCCGCCCGTGTGGCGCGAGATCTCGCGTCTCAATCCGTTTTTCTACATGATCGACGGCTTCCGTTTCGGGTTCT
TCGGCGCGTCCGACATCAACCCGTTCGCGAGCCTCGCGATCGTCACCGGTTTCTTCGTGCTGCTCGCGCTGATTGCGATG
CGGCTGCTCGCGACCGGCTACAAACTGCGTCATTGA

Upstream 100 bases:

>100_bases
CGGCGGGCTGCACGTTCGACGAGATCGAGGTCCGCAAGGCCGACCTCGAAGATGTGTTCGTCCAGGTGATGAACGGGGCA
GACGTCATCGAGGGATTGGC

Downstream 100 bases:

>100_bases
TATCGACAGGCAGCGGCCGCCATCCGGGCGGCGCGCGCCGACAGGAGCCTTACACCATGTTGCCGACTCCCGAACAGGTC
AAGCAATACATCGCCGGCGG

Product: ABC efflux pump, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MSGFQTLFYKELLRFWKVSFQTVCAPIVTALLYLTIFGHALSGRVEVYPGVEYVSFLVPGLVMMSVLQNAFANSSSSLIQ
SKITGNLVFMLLPPLSYRDIFGAYVLASVVRGLAVGTGVFVVTIWFIPMHFAAPLFIIAFALLGSAILGTLGLIAGIWAE
KFDQLAAFQNFLIMPLTFLSGVFYSTHSLPPVWREISRLNPFFYMIDGFRFGFFGASDINPFASLAIVTGFFVLLALIAM
RLLATGYKLRH

Sequences:

>Translated_251_residues
MSGFQTLFYKELLRFWKVSFQTVCAPIVTALLYLTIFGHALSGRVEVYPGVEYVSFLVPGLVMMSVLQNAFANSSSSLIQ
SKITGNLVFMLLPPLSYRDIFGAYVLASVVRGLAVGTGVFVVTIWFIPMHFAAPLFIIAFALLGSAILGTLGLIAGIWAE
KFDQLAAFQNFLIMPLTFLSGVFYSTHSLPPVWREISRLNPFFYMIDGFRFGFFGASDINPFASLAIVTGFFVLLALIAM
RLLATGYKLRH
>Mature_250_residues
SGFQTLFYKELLRFWKVSFQTVCAPIVTALLYLTIFGHALSGRVEVYPGVEYVSFLVPGLVMMSVLQNAFANSSSSLIQS
KITGNLVFMLLPPLSYRDIFGAYVLASVVRGLAVGTGVFVVTIWFIPMHFAAPLFIIAFALLGSAILGTLGLIAGIWAEK
FDQLAAFQNFLIMPLTFLSGVFYSTHSLPPVWREISRLNPFFYMIDGFRFGFFGASDINPFASLAIVTGFFVLLALIAMR
LLATGYKLRH

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=247, Percent_Identity=38.4615384615385, Blast_Score=171, Evalue=3e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 27760; Mature: 27629

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGFQTLFYKELLRFWKVSFQTVCAPIVTALLYLTIFGHALSGRVEVYPGVEYVSFLVPG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHH
LVMMSVLQNAFANSSSSLIQSKITGNLVFMLLPPLSYRDIFGAYVLASVVRGLAVGTGVF
HHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVTIWFIPMHFAAPLFIIAFALLGSAILGTLGLIAGIWAEKFDQLAAFQNFLIMPLTFLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVFYSTHSLPPVWREISRLNPFFYMIDGFRFGFFGASDINPFASLAIVTGFFVLLALIAM
HHHHHHCCCCHHHHHHHHCCCHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RLLATGYKLRH
HHHHHCHHCCC
>Mature Secondary Structure 
SGFQTLFYKELLRFWKVSFQTVCAPIVTALLYLTIFGHALSGRVEVYPGVEYVSFLVPG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHH
LVMMSVLQNAFANSSSSLIQSKITGNLVFMLLPPLSYRDIFGAYVLASVVRGLAVGTGVF
HHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
VVTIWFIPMHFAAPLFIIAFALLGSAILGTLGLIAGIWAEKFDQLAAFQNFLIMPLTFLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVFYSTHSLPPVWREISRLNPFFYMIDGFRFGFFGASDINPFASLAIVTGFFVLLALIAM
HHHHHHCCCCHHHHHHHHCCCHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
RLLATGYKLRH
HHHHHCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]