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The map label for this gene is ompW [H]

Identifier: 78064974

GI number: 78064974

Start: 361013

End: 361744

Strand: Reverse

Name: ompW [H]

Synonym: Bcep18194_A3497

Alternate gene names: 78064974

Gene position: 361744-361013 (Counterclockwise)

Preceding gene: 78064981

Following gene: 78064963

Centisome position: 9.79

GC content: 63.39

Gene sequence:

>732_bases
ATGAAACGAAAACTGGCCATTACGGGGGCCGCAGCGCTCGCATTCGCGTTCGCGGGCGGTACGGCACATGCACAATCCGC
AGGTGATTTCTACGTCAGCACCGGCTGGCTGCACCTTGCGCCGCAGGACAGCAGCGACCCGCTGTTCCTCTACGGCGTCG
GCGGCACGCCCATCAACCAATCGGTGCCCAACACCGGCGCCGGCATCAGCGACGCCGACACGCTTGCGCTGGCGACCGGT
TACTTCGTGACCGACCACATCGCCACGGAGTTCATCGCCGGCATTCCGCCGAAGTTCGACATCACCGGCAAGGGCCAGTT
CTCGAATTTTGGTACGCTTGGCCGCGCGTACCAGTGGAGCCCCGCGCTCCTCCTCAAGTACTACTTCAACGACGCCAACG
CGAAGTTCCGTCCGTATGTCGGCGTCGGCGCGACGTATATCTGGTTCACCGGCGCGAAGATCACGAACAGCGCATTCGAG
AACGGCGTGCTCGGCGGCCCGACCAGCGCGCAGACCAGCAACCAGTGGGCGCCCGTGTTCAACGCCGGCTTCACGTACAA
CTTCACGAAACACTGGTTCGCCGGCTTCTCGATGTCGTACATCCCGGTCAGCGTGACCGCGACCTTCACGACGGCCCGCC
GCACGCCGGTCGGTACGCTGACGGAAACGTCGAAGGCTCACATCTCGCTGAACCCGATCGTGACGTACCTGAACGTCGGC
TACCGCTTCTAA

Upstream 100 bases:

>100_bases
ACGGTCGTACGAATCCTAGGGAGAAAACTCTAACTTACGAGCTTGTTTGGTTTTAAACGCAGTCGTCATAATGAGCACGC
CTTTGATCGGAGGAGACACA

Downstream 100 bases:

>100_bases
GCGTAGTCGAATATTTGGGGAATGGTTAATCCTGCTGCAATTTGTAGCGGATTTTTCCTGACGTAACGTCTCCACGATGC
GAAACGCCCCGGCGGGAATC

Product: OmpW family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MKRKLAITGAAALAFAFAGGTAHAQSAGDFYVSTGWLHLAPQDSSDPLFLYGVGGTPINQSVPNTGAGISDADTLALATG
YFVTDHIATEFIAGIPPKFDITGKGQFSNFGTLGRAYQWSPALLLKYYFNDANAKFRPYVGVGATYIWFTGAKITNSAFE
NGVLGGPTSAQTSNQWAPVFNAGFTYNFTKHWFAGFSMSYIPVSVTATFTTARRTPVGTLTETSKAHISLNPIVTYLNVG
YRF

Sequences:

>Translated_243_residues
MKRKLAITGAAALAFAFAGGTAHAQSAGDFYVSTGWLHLAPQDSSDPLFLYGVGGTPINQSVPNTGAGISDADTLALATG
YFVTDHIATEFIAGIPPKFDITGKGQFSNFGTLGRAYQWSPALLLKYYFNDANAKFRPYVGVGATYIWFTGAKITNSAFE
NGVLGGPTSAQTSNQWAPVFNAGFTYNFTKHWFAGFSMSYIPVSVTATFTTARRTPVGTLTETSKAHISLNPIVTYLNVG
YRF
>Mature_243_residues
MKRKLAITGAAALAFAFAGGTAHAQSAGDFYVSTGWLHLAPQDSSDPLFLYGVGGTPINQSVPNTGAGISDADTLALATG
YFVTDHIATEFIAGIPPKFDITGKGQFSNFGTLGRAYQWSPALLLKYYFNDANAKFRPYVGVGATYIWFTGAKITNSAFE
NGVLGGPTSAQTSNQWAPVFNAGFTYNFTKHWFAGFSMSYIPVSVTATFTTARRTPVGTLTETSKAHISLNPIVTYLNVG
YRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=243, Percent_Identity=26.7489711934156, Blast_Score=78, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 25993; Mature: 25993

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKLAITGAAALAFAFAGGTAHAQSAGDFYVSTGWLHLAPQDSSDPLFLYGVGGTPINQ
CCCEEEEEHHHEEEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCEEEEECCCCCCCC
SVPNTGAGISDADTLALATGYFVTDHIATEFIAGIPPKFDITGKGQFSNFGTLGRAYQWS
CCCCCCCCCCCCCEEEEEECEEEHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEECC
PALLLKYYFNDANAKFRPYVGVGATYIWFTGAKITNSAFENGVLGGPTSAQTSNQWAPVF
CEEEEEEEECCCCCEECEEECCCEEEEEEECCEEECHHHHCCCCCCCCCCCCCCCCCEEE
NAGFTYNFTKHWFAGFSMSYIPVSVTATFTTARRTPVGTLTETSKAHISLNPIVTYLNVG
ECCEEEECHHHHHCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCEEEEEECC
YRF
CCC
>Mature Secondary Structure
MKRKLAITGAAALAFAFAGGTAHAQSAGDFYVSTGWLHLAPQDSSDPLFLYGVGGTPINQ
CCCEEEEEHHHEEEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCEEEEECCCCCCCC
SVPNTGAGISDADTLALATGYFVTDHIATEFIAGIPPKFDITGKGQFSNFGTLGRAYQWS
CCCCCCCCCCCCCEEEEEECEEEHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEECC
PALLLKYYFNDANAKFRPYVGVGATYIWFTGAKITNSAFENGVLGGPTSAQTSNQWAPVF
CEEEEEEEECCCCCEECEEECCCEEEEEEECCEEECHHHHCCCCCCCCCCCCCCCCCEEE
NAGFTYNFTKHWFAGFSMSYIPVSVTATFTTARRTPVGTLTETSKAHISLNPIVTYLNVG
ECCEEEECHHHHHCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEECCEEEEEECC
YRF
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]