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The map label for this gene is ccsA [H]

Identifier: 78064958

GI number: 78064958

Start: 344281

End: 345471

Strand: Direct

Name: ccsA [H]

Synonym: Bcep18194_A3481

Alternate gene names: 78064958

Gene position: 344281-345471 (Clockwise)

Preceding gene: 78064957

Following gene: 78064959

Centisome position: 9.32

GC content: 64.9

Gene sequence:

>1191_bases
ATGGATCTCACGCAAGTTTCCTCTTCCCATCGGGCGTCGGCCCAGGCTCCGGTTATGGCGCCGCTGTTCGACGACCGTCC
GTTCCTCGCGCGCCTGTCGTTGCTCGACTGGCTGTTCGCACTGGCGCTCGTGGTGGGCGCGGGCTATGCGCTCGTGCACT
ACAACGCGCACATGGATTACTACGACAAGGCGGTGATGATCGGCACCGTGCCGGCGCTCATCACGCTCGGCTGGCGCTGG
AAGCCCGCGCGGCTGATGATGGCGTCGATCGCCGTGCTGGCGCTGCTGTCGATCCAGATCTACCAGGGCGATCTCGCACG
CGCCGATTCGGCGTTCTTCCTCAAGTATTTCCTGTCGAGCCAGTCGGCCATCCTGTGGATGAGCGCGCTGTTCGTGCTCG
CGACGATCTTCTACTGGATCGGTTTGCTCGCGCGCTCGGAGTCGGGCTCCGCGATCGGCCAGAAGCTCACGTGGGTCGCC
GTGCTGATGGGCTTCACCGGGCTGATGGTGCGCTGGTACGAGTCCTACCTGATCGGCGCGGACGTCGGGCACATTCCGGT
GTCGAACCTGTATGAAGTGTTCGTGCTGTTCAGCCTGATCACCGCGCTGCTCTATCTGTATTACGAAGGCCACTACGGCA
CGCGCGCGCTCGGCGCGTTCGTGCTGCTGGTGATCAGCGCGGCCGTCGGCTTCCTGATGTGGTACTCGGTCGCGCGCGAT
GCGCAGCAGATCCAGCCGCTCGTGCCGGCGCTGCAGAGCTGGTGGATGAAGATCCACGTGCCGGCGAACTTCATCGGCTA
CGGCAGCTTCGCGCTGTCGGCGATGGTGTCGGTCGCGTACCTGATGAAGGAGCGCGGCGTGCTCGCGGATCGCCTGCCGA
CGCTCGAAGTGCTCGACGACGTGATGTACAAGTCGATCGCGGTCGGTTTCGCGTTCTTCACGATCGCGACGATCCTCGGC
GCGCTGTGGGCCGCCGAAGCATGGGGCGGCTACTGGAGCTGGGACCCGAAGGAAACCTGGGCGCTGATCGTGTGGCTCAA
CTACGCGGCGTGGCTGCACATGCGCCTGATGAAGGGCCTGCGCGGCACGGTGGCCGCATGGTGGGCGCTCACGGGCCTGC
TCGTGACGACCTTCGCGTTCCTCGGCGTCAACATGTTCCTGTCCGGGCTGCACAGCTACGGCAAGCTGTAA

Upstream 100 bases:

>100_bases
CACGCCGCACCTCGCGACGCCGCGCCGGCCGGTGCGGCATCGACGGCCCGTCCGCCTGCCGGCGGCGGTTCCGATTCCGA
GAATTCCACCCGGTAACATC

Downstream 100 bases:

>100_bases
GATTTCCGCTGTTCGTCCGACTATGAGACCGCCGGTGCACCGTGTGCCCGGCGGTTTTCTTTTGTAACGGGCGGGCGGTC
CGGGCGTCGAACGGCGCAAG

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MDLTQVSSSHRASAQAPVMAPLFDDRPFLARLSLLDWLFALALVVGAGYALVHYNAHMDYYDKAVMIGTVPALITLGWRW
KPARLMMASIAVLALLSIQIYQGDLARADSAFFLKYFLSSQSAILWMSALFVLATIFYWIGLLARSESGSAIGQKLTWVA
VLMGFTGLMVRWYESYLIGADVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSVARD
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVSVAYLMKERGVLADRLPTLEVLDDVMYKSIAVGFAFFTIATILG
ALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL

Sequences:

>Translated_396_residues
MDLTQVSSSHRASAQAPVMAPLFDDRPFLARLSLLDWLFALALVVGAGYALVHYNAHMDYYDKAVMIGTVPALITLGWRW
KPARLMMASIAVLALLSIQIYQGDLARADSAFFLKYFLSSQSAILWMSALFVLATIFYWIGLLARSESGSAIGQKLTWVA
VLMGFTGLMVRWYESYLIGADVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSVARD
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVSVAYLMKERGVLADRLPTLEVLDDVMYKSIAVGFAFFTIATILG
ALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL
>Mature_396_residues
MDLTQVSSSHRASAQAPVMAPLFDDRPFLARLSLLDWLFALALVVGAGYALVHYNAHMDYYDKAVMIGTVPALITLGWRW
KPARLMMASIAVLALLSIQIYQGDLARADSAFFLKYFLSSQSAILWMSALFVLATIFYWIGLLARSESGSAIGQKLTWVA
VLMGFTGLMVRWYESYLIGADVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSVARD
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVSVAYLMKERGVLADRLPTLEVLDDVMYKSIAVGFAFFTIATILG
ALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 44137; Mature: 44137

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTQVSSSHRASAQAPVMAPLFDDRPFLARLSLLDWLFALALVVGAGYALVHYNAHMDY
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH
YDKAVMIGTVPALITLGWRWKPARLMMASIAVLALLSIQIYQGDLARADSAFFLKYFLSS
HHCCHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHCC
QSAILWMSALFVLATIFYWIGLLARSESGSAIGQKLTWVAVLMGFTGLMVRWYESYLIGA
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSVARD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVSVAYLMKERGVLADRLPTLEVLDD
HHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHH
VMYKSIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHH
RGTVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLTQVSSSHRASAQAPVMAPLFDDRPFLARLSLLDWLFALALVVGAGYALVHYNAHMDY
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH
YDKAVMIGTVPALITLGWRWKPARLMMASIAVLALLSIQIYQGDLARADSAFFLKYFLSS
HHCCHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHCC
QSAILWMSALFVLATIFYWIGLLARSESGSAIGQKLTWVAVLMGFTGLMVRWYESYLIGA
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSVARD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVSVAYLMKERGVLADRLPTLEVLDD
HHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHH
VMYKSIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHH
RGTVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA