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The map label for this gene is cyt [H]

Identifier: 78064871

GI number: 78064871

Start: 252332

End: 252694

Strand: Direct

Name: cyt [H]

Synonym: Bcep18194_A3394

Alternate gene names: 78064871

Gene position: 252332-252694 (Clockwise)

Preceding gene: 78064870

Following gene: 78064875

Centisome position: 6.83

GC content: 67.22

Gene sequence:

>363_bases
ATGAAGAACAGGCAGATGAAGCAGATGAAACAGTGGATGGTGCAGGGCGCCGCGGCTGCGGCGCTCGTGGTCGGCACGCT
GGGCGTCGCGCACGCGGATGTCGGCGATGGCCTGAAGGTTGCGCGCGGCAACGCGTGCATGGGCTGCCATGCGGTCGACC
GCAAGCTCGTCGGCCCGTCGTTCAAGGATATCGCCGCCCGTTACAAGGCTGATCCGCAGGCCGTGGCCAAGCTGTCGAAG
AAGGTGAAGGAGGGCGGCTCCGGCGTCTGGGGCGCCATTCCGATGCCCGCGCACCCGCGCATGAGCGACGCCGACGTGCG
TTCGGTGGTCGAATGGGTGCTGGCTGGCGCGCCGTCAAAGTAA

Upstream 100 bases:

>100_bases
CCGTGCCCGACGCGTCGGTGCAGTCCACGCCGCTGCAGCCGCCCGCACCGATCTCGAATTCGTCGAACGTACACCCGGGC
AACCCGAAGGCCCCGTCGCA

Downstream 100 bases:

>100_bases
GGTTTCAGGGGTGATTCAACCCCTATTGCCAAGCGCAGAAACGCGTGTGTATGATGGTTGTCTGTTGGGGCGGTAGCTCA
GCTGGGAGAGCGTCGCGTTC

Product: cytochrome c, class I

Products: NA

Alternate protein names: Cytochrome c-551; Cytochrome c552 [H]

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MKNRQMKQMKQWMVQGAAAAALVVGTLGVAHADVGDGLKVARGNACMGCHAVDRKLVGPSFKDIAARYKADPQAVAKLSK
KVKEGGSGVWGAIPMPAHPRMSDADVRSVVEWVLAGAPSK

Sequences:

>Translated_120_residues
MKNRQMKQMKQWMVQGAAAAALVVGTLGVAHADVGDGLKVARGNACMGCHAVDRKLVGPSFKDIAARYKADPQAVAKLSK
KVKEGGSGVWGAIPMPAHPRMSDADVRSVVEWVLAGAPSK
>Mature_120_residues
MKNRQMKQMKQWMVQGAAAAALVVGTLGVAHADVGDGLKVARGNACMGCHAVDRKLVGPSFKDIAARYKADPQAVAKLSK
KVKEGGSGVWGAIPMPAHPRMSDADVRSVVEWVLAGAPSK

Specific function: Monoheme c-type cytochrome. Probable electron donor to membrane cytochrome oxidase and to periplasmic nitrite reductase [H]

COG id: COG4654

COG function: function code C; Cytochrome c551/c552

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR002324 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 12593; Mature: 12593

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNRQMKQMKQWMVQGAAAAALVVGTLGVAHADVGDGLKVARGNACMGCHAVDRKLVGPS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHCCCC
FKDIAARYKADPQAVAKLSKKVKEGGSGVWGAIPMPAHPRMSDADVRSVVEWVLAGAPSK
HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKNRQMKQMKQWMVQGAAAAALVVGTLGVAHADVGDGLKVARGNACMGCHAVDRKLVGPS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHCCCC
FKDIAARYKADPQAVAKLSKKVKEGGSGVWGAIPMPAHPRMSDADVRSVVEWVLAGAPSK
HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9746537; 12700255 [H]