| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is 78064816
Identifier: 78064816
GI number: 78064816
Start: 192531
End: 194729
Strand: Direct
Name: 78064816
Synonym: Bcep18194_A3339
Alternate gene names: NA
Gene position: 192531-194729 (Clockwise)
Preceding gene: 78064815
Following gene: 78064817
Centisome position: 5.21
GC content: 70.44
Gene sequence:
>2199_bases ATGGACGGAACAGGACAGGCATTGCAGGCGGCGCTCGCGCATCATGAGGCGGGGCGTCTCGCCGAAGCGAAGACGCTGTA CGACGCGATCCTCACCGCGCAGCCGGGCCAGCCGGATGCGCTGCATTTTCTCGGGCTGCTGGCGTGCCAGCTGAAGCAGT ACGACGCGGGCATCGCGCTGATGGAGCAATCGCTCGTCGAGCGACCGGACGCGTCGTACTTCAACAACCTGGGCAACATG CTGCGCGAAAACGGTCGGCTCGACGACGCGATCGCGCACTATCGGCGCGCGGTGGCGCTGCGGCCGGACTATCCGGAGGC GCACAACAATCTCGGCAACGCGTTGCGCGACGCGCGCGAGCCGGCGGCCGCGATGGAGAGCTGCGCGCGTGCGATCGAGC TGCGCCCCGGTTACGCGGAGGCGTACAACAACCTTGGCAACGCGCTGCAGGATCTGGGCGACTTTGATCGCGCCGCGTCG CACTACGGCCGCGCGATCGAGCTGGACCCGTCGATGGCGATGGCCCACGCGAACTTGAGCGCGGTGCGTCACCGGCAGCT GCGCTGCGCGGAAGCGCTCGCGCATGCGCAGGACGCGATCCGGCTCGCGCCGAACCTCGCCGACGCGCACAACCACGCGG GCAACGCGTATCACGGACTGGACCGGCTCGATGCGGCGCAGGCCAGCCACCGCACGGCTGTCACGCTGAATCCGGCGGAC GCCGGCGCGTGCCACAACCTGTCCGTCGTGCTGCTGAAGCTGCAGCGGCTCGACGAGGCGCTCGTGTATTGCCGGCAGGC GTTGCAGGCCGGCCCGCCGGCCGCGTTGATGCACGTCAATCTCGGCGACATCCTGCGCGCGCAGGGCAACGTCGATGCCG CGGTCCACGCGTATCGCGATGCGCTTGCGCTGGTGCGCGACGACGCCGACGACGTCGCGGCGACCGTGCTGAACCGGCTG CTGTTCAGCGCGGCGGCGTCCGCTTGCGTGAACCCCGCCGACTACCTGGCCGACGCGCGGCGCTACGGCCGGCACCTGGC CGCGCGTTCGACGCGCCATGCGCACGATCCGCGTGAGCGGGCCGCGCGCGCGCAGGGGCGGCCACTGCGTGTCGGCTTCG TGTCCGGCGACCTGCGCCTGCATCCGGTCGGCATCTTCCTGGAAAGCGTGCTCGCGCACCTCGAGCGCACGCGCATCGAC CTGCGCGTGTACGTGACCACGGACGAGGAGGACGCGATCACCGCGAAACTGAAGCCGCACGCGAGCGGCTGGCGTTCGAT CGCCGCGCTGGGTCCGGACGCGGCCGCGCGGATGATTCACGACGACGAAATCGACGTCCTCGTCGACCTCGCCGGCCATA CGCAGTCGAGCGGGTTGGCCGTTTTTGGCTGGAAACCCGCGCCGGTACAGGCGAGCTGGCTCGGCTTCTTCGCGTCGACC GGCTGCGACGCGATCGATTACTTCATCGGCGACCGCTACACGCAGCCGGACGCCGAAGCGCATCACTTCGTCGAGAAGCC GTGGCGGCTGCCGGACAGCTTCCTGTGCTTCACGCCGCCGGCCTGCGACGTCGAGGTCGGGCCGCTGCCGATGGCGGCGC GCGGCCATCCGACGTTCGGTTGCTTCGGCCAGCTCGTGAAGATCGGCGACGACGTCGTGCGCGCATGGTCGCGCATCCTG CACGCGCTGCCGGACGCGCGGCTGCTGCTCAAGGCGCACGAACTCGGCCGCGAGGGCGTGCGCGACGCGACCGCCGCGCG CTTCGCGCGGCATGGCATCGACCCGGACCGGCTGATCCTCGAGGGCGGTTCGCCGCGCGCGGAATACTTTGCCGCGTATA ACCGCATCGACGTCGCGCTGAGCCCGTTTCCGTACCCGGGCGGCACGACCACCGCCGAAGCGCTGTGGATGGGCGTGCCG GTGCTCGGGATGAAGGGCGGCCGGTTCGTCACGCACATTTGCGAAAGCGTGCTGCACGCGGCGGGCATGGGCGAATGGGT CGCTGACGGCGAGGACGCCTACGTCGCGAAGGCGATCGCGGCGGTGCGCGACCGCGAGCCGCTCGCGACGCTGCGCGCCG GGCTGCGCGCGCAACTGCTCGCGTCGCCGCTGTGCGACGCGCGCCGGTTCGCGGCGCATCTCGAAGCGGCGTTCATCGGC ATGTGGCAACGCTATACGAACTCGGAACACGAAGCATGA
Upstream 100 bases:
>100_bases CGCGCGATGGGATGGCGGCGTCGGCCGTGATGATCGGGCACGGCGGCAGGCTGATCGACTTCGGACGCGAACCGCATCCC TATTGAGCAGAGCAGACGAG
Downstream 100 bases:
>100_bases ACGATATTCAAGACACGCTGCAGTCCGCGCTGGCGCATCATCAGGCGGGCCGTCTCGCCGAAGCGAAGACGCTGTACGAC GCGATCCTCACCGCGCAGCC
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; SPINDLY Family O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_1 Repeat-Containing Protein; Methyltransferase Type; TPR Repeat Protein; TPR Domain Protein; Glycosyl Transferase Family Protein; SPY Protein; Glycosyltransferase TPR Domain Protein; Sulfotransferase; TPR Repeat; Tetratricopeptide Repeat-Containing Protein; Tpr Repeat-Containing Protein; Tetratricopeptide Repeat Family; Methyltransferase Regulatory Domain; Porphyrin Biosynthesis Protein; Tetratricopeptide Domain Protein; Transferase; Tetratricopeptide Repeat Family Protein; TPR Repeat-Containing Glycosyl Transferase; Peptidase S1 And S6 Chymotrypsin/Hap; FkbM Family Methyltransferase; O-Linked GLCNAC Transferase; TPR Domain/SEC-C Motif Domain Protein; Glycosyl Transferase TPR Repeat Protein; O-Linked N-Acetylglucosamine TransferaNDLY Family; Glycosyl Transferase; Tetratricopeptide Repeat Protein; O-Linked Acetylglucosamine Transferase
Number of amino acids: Translated: 732; Mature: 732
Protein sequence:
>732_residues MDGTGQALQAALAHHEAGRLAEAKTLYDAILTAQPGQPDALHFLGLLACQLKQYDAGIALMEQSLVERPDASYFNNLGNM LRENGRLDDAIAHYRRAVALRPDYPEAHNNLGNALRDAREPAAAMESCARAIELRPGYAEAYNNLGNALQDLGDFDRAAS HYGRAIELDPSMAMAHANLSAVRHRQLRCAEALAHAQDAIRLAPNLADAHNHAGNAYHGLDRLDAAQASHRTAVTLNPAD AGACHNLSVVLLKLQRLDEALVYCRQALQAGPPAALMHVNLGDILRAQGNVDAAVHAYRDALALVRDDADDVAATVLNRL LFSAAASACVNPADYLADARRYGRHLAARSTRHAHDPRERAARAQGRPLRVGFVSGDLRLHPVGIFLESVLAHLERTRID LRVYVTTDEEDAITAKLKPHASGWRSIAALGPDAAARMIHDDEIDVLVDLAGHTQSSGLAVFGWKPAPVQASWLGFFAST GCDAIDYFIGDRYTQPDAEAHHFVEKPWRLPDSFLCFTPPACDVEVGPLPMAARGHPTFGCFGQLVKIGDDVVRAWSRIL HALPDARLLLKAHELGREGVRDATAARFARHGIDPDRLILEGGSPRAEYFAAYNRIDVALSPFPYPGGTTTAEALWMGVP VLGMKGGRFVTHICESVLHAAGMGEWVADGEDAYVAKAIAAVRDREPLATLRAGLRAQLLASPLCDARRFAAHLEAAFIG MWQRYTNSEHEA
Sequences:
>Translated_732_residues MDGTGQALQAALAHHEAGRLAEAKTLYDAILTAQPGQPDALHFLGLLACQLKQYDAGIALMEQSLVERPDASYFNNLGNM LRENGRLDDAIAHYRRAVALRPDYPEAHNNLGNALRDAREPAAAMESCARAIELRPGYAEAYNNLGNALQDLGDFDRAAS HYGRAIELDPSMAMAHANLSAVRHRQLRCAEALAHAQDAIRLAPNLADAHNHAGNAYHGLDRLDAAQASHRTAVTLNPAD AGACHNLSVVLLKLQRLDEALVYCRQALQAGPPAALMHVNLGDILRAQGNVDAAVHAYRDALALVRDDADDVAATVLNRL LFSAAASACVNPADYLADARRYGRHLAARSTRHAHDPRERAARAQGRPLRVGFVSGDLRLHPVGIFLESVLAHLERTRID LRVYVTTDEEDAITAKLKPHASGWRSIAALGPDAAARMIHDDEIDVLVDLAGHTQSSGLAVFGWKPAPVQASWLGFFAST GCDAIDYFIGDRYTQPDAEAHHFVEKPWRLPDSFLCFTPPACDVEVGPLPMAARGHPTFGCFGQLVKIGDDVVRAWSRIL HALPDARLLLKAHELGREGVRDATAARFARHGIDPDRLILEGGSPRAEYFAAYNRIDVALSPFPYPGGTTTAEALWMGVP VLGMKGGRFVTHICESVLHAAGMGEWVADGEDAYVAKAIAAVRDREPLATLRAGLRAQLLASPLCDARRFAAHLEAAFIG MWQRYTNSEHEA >Mature_732_residues MDGTGQALQAALAHHEAGRLAEAKTLYDAILTAQPGQPDALHFLGLLACQLKQYDAGIALMEQSLVERPDASYFNNLGNM LRENGRLDDAIAHYRRAVALRPDYPEAHNNLGNALRDAREPAAAMESCARAIELRPGYAEAYNNLGNALQDLGDFDRAAS HYGRAIELDPSMAMAHANLSAVRHRQLRCAEALAHAQDAIRLAPNLADAHNHAGNAYHGLDRLDAAQASHRTAVTLNPAD AGACHNLSVVLLKLQRLDEALVYCRQALQAGPPAALMHVNLGDILRAQGNVDAAVHAYRDALALVRDDADDVAATVLNRL LFSAAASACVNPADYLADARRYGRHLAARSTRHAHDPRERAARAQGRPLRVGFVSGDLRLHPVGIFLESVLAHLERTRID LRVYVTTDEEDAITAKLKPHASGWRSIAALGPDAAARMIHDDEIDVLVDLAGHTQSSGLAVFGWKPAPVQASWLGFFAST GCDAIDYFIGDRYTQPDAEAHHFVEKPWRLPDSFLCFTPPACDVEVGPLPMAARGHPTFGCFGQLVKIGDDVVRAWSRIL HALPDARLLLKAHELGREGVRDATAARFARHGIDPDRLILEGGSPRAEYFAAYNRIDVALSPFPYPGGTTTAEALWMGVP VLGMKGGRFVTHICESVLHAAGMGEWVADGEDAYVAKAIAAVRDREPLATLRAGLRAQLLASPLCDARRFAAHLEAAFIG MWQRYTNSEHEA
Specific function: Unknown
COG id: COG3914
COG function: function code O; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI32307150, Length=499, Percent_Identity=29.0581162324649, Blast_Score=196, Evalue=4e-50, Organism=Homo sapiens, GI32307148, Length=499, Percent_Identity=29.0581162324649, Blast_Score=196, Evalue=5e-50, Organism=Homo sapiens, GI118766330, Length=265, Percent_Identity=30.9433962264151, Blast_Score=97, Evalue=5e-20, Organism=Homo sapiens, GI118766328, Length=265, Percent_Identity=30.9433962264151, Blast_Score=97, Evalue=6e-20, Organism=Homo sapiens, GI301336134, Length=235, Percent_Identity=30.2127659574468, Blast_Score=93, Evalue=1e-18, Organism=Homo sapiens, GI83415184, Length=235, Percent_Identity=30.2127659574468, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI224809432, Length=218, Percent_Identity=27.0642201834862, Blast_Score=67, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115532692, Length=499, Percent_Identity=27.6553106212425, Blast_Score=187, Evalue=2e-47, Organism=Caenorhabditis elegans, GI115532690, Length=499, Percent_Identity=27.6553106212425, Blast_Score=186, Evalue=3e-47, Organism=Caenorhabditis elegans, GI25147174, Length=223, Percent_Identity=28.6995515695067, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI17647755, Length=504, Percent_Identity=27.3809523809524, Blast_Score=191, Evalue=2e-48, Organism=Drosophila melanogaster, GI24585827, Length=504, Percent_Identity=27.3809523809524, Blast_Score=191, Evalue=2e-48, Organism=Drosophila melanogaster, GI24585829, Length=504, Percent_Identity=27.3809523809524, Blast_Score=191, Evalue=2e-48, Organism=Drosophila melanogaster, GI24647123, Length=250, Percent_Identity=29.6, Blast_Score=92, Evalue=1e-18, Organism=Drosophila melanogaster, GI161076610, Length=265, Percent_Identity=27.5471698113208, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI19920486, Length=265, Percent_Identity=27.5471698113208, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI281364285, Length=338, Percent_Identity=26.3313609467456, Blast_Score=71, Evalue=3e-12, Organism=Drosophila melanogaster, GI24581187, Length=336, Percent_Identity=26.4880952380952, Blast_Score=70, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79337; Mature: 79337
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGTGQALQAALAHHEAGRLAEAKTLYDAILTAQPGQPDALHFLGLLACQLKQYDAGIAL CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHH MEQSLVERPDASYFNNLGNMLRENGRLDDAIAHYRRAVALRPDYPEAHNNLGNALRDARE HHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH PAAAMESCARAIELRPGYAEAYNNLGNALQDLGDFDRAASHYGRAIELDPSMAMAHANLS HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHH AVRHRQLRCAEALAHAQDAIRLAPNLADAHNHAGNAYHGLDRLDAAQASHRTAVTLNPAD HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHCCCEEEEECCCC AGACHNLSVVLLKLQRLDEALVYCRQALQAGPPAALMHVNLGDILRAQGNVDAAVHAYRD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCCHHHHHHHHH ALALVRDDADDVAATVLNRLLFSAAASACVNPADYLADARRYGRHLAARSTRHAHDPRER HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH AARAQGRPLRVGFVSGDLRLHPVGIFLESVLAHLERTRIDLRVYVTTDEEDAITAKLKPH HHHCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEEEECCC ASGWRSIAALGPDAAARMIHDDEIDVLVDLAGHTQSSGLAVFGWKPAPVQASWLGFFAST CCCHHHHHHCCCHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHC GCDAIDYFIGDRYTQPDAEAHHFVEKPWRLPDSFLCFTPPACDVEVGPLPMAARGHPTFG CCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHH CFGQLVKIGDDVVRAWSRILHALPDARLLLKAHELGREGVRDATAARFARHGIDPDRLIL HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE EGGSPRAEYFAAYNRIDVALSPFPYPGGTTTAEALWMGVPVLGMKGGRFVTHICESVLHA ECCCCHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH AGMGEWVADGEDAYVAKAIAAVRDREPLATLRAGLRAQLLASPLCDARRFAAHLEAAFIG CCCCCHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MWQRYTNSEHEA HHHHHCCCCCCC >Mature Secondary Structure MDGTGQALQAALAHHEAGRLAEAKTLYDAILTAQPGQPDALHFLGLLACQLKQYDAGIAL CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHH MEQSLVERPDASYFNNLGNMLRENGRLDDAIAHYRRAVALRPDYPEAHNNLGNALRDARE HHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH PAAAMESCARAIELRPGYAEAYNNLGNALQDLGDFDRAASHYGRAIELDPSMAMAHANLS HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHH AVRHRQLRCAEALAHAQDAIRLAPNLADAHNHAGNAYHGLDRLDAAQASHRTAVTLNPAD HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHCCCEEEEECCCC AGACHNLSVVLLKLQRLDEALVYCRQALQAGPPAALMHVNLGDILRAQGNVDAAVHAYRD CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCCHHHHHHHHH ALALVRDDADDVAATVLNRLLFSAAASACVNPADYLADARRYGRHLAARSTRHAHDPRER HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHH AARAQGRPLRVGFVSGDLRLHPVGIFLESVLAHLERTRIDLRVYVTTDEEDAITAKLKPH HHHCCCCCEEEEEEECCCEEEHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCEEEEECCC ASGWRSIAALGPDAAARMIHDDEIDVLVDLAGHTQSSGLAVFGWKPAPVQASWLGFFAST CCCHHHHHHCCCHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHC GCDAIDYFIGDRYTQPDAEAHHFVEKPWRLPDSFLCFTPPACDVEVGPLPMAARGHPTFG CCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHH CFGQLVKIGDDVVRAWSRILHALPDARLLLKAHELGREGVRDATAARFARHGIDPDRLIL HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE EGGSPRAEYFAAYNRIDVALSPFPYPGGTTTAEALWMGVPVLGMKGGRFVTHICESVLHA ECCCCHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH AGMGEWVADGEDAYVAKAIAAVRDREPLATLRAGLRAQLLASPLCDARRFAAHLEAAFIG CCCCCHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MWQRYTNSEHEA HHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA