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The map label for this gene is yafC [H]

Identifier: 78064788

GI number: 78064788

Start: 154773

End: 155657

Strand: Reverse

Name: yafC [H]

Synonym: Bcep18194_A3311

Alternate gene names: 78064788

Gene position: 155657-154773 (Counterclockwise)

Preceding gene: 78064790

Following gene: 78064783

Centisome position: 4.21

GC content: 67.91

Gene sequence:

>885_bases
ATGGACAACCTGACCGGCATCGTCGCCTTCGTCCGCACCGCGGAAGCACTGAGCTTCGTCGCGGCCGGCCGCACGCTCGG
CATCTCGGCGTCGGCAGTCGGCAAGACGATCGCGAAACTCGAGCAGTCGCTCGGCGTGCGGCTGTTCAACCGCACGACGC
GGCGCGTCACGCTCACCGAAGAAGGGCGGCACTTCTACGAACGCTGCCAGCGAATCCTCGAGGATTTCCGCGACGCGGAA
GCGACCGTAACGGCCTCCGCACAGCGCCCGCGCGGCAGGCTGCGCGTGAGCCTGCCGGTGATCGGCTACCGGTTCCTGCT
GCCGGTGCTGCCCGAATTCCGGCAGCGCTACCCGGACGTCGAGCTCGATCTCGATTTCAACGACCGGATGGTGGATGTCG
TCGAAGGCGGCTTCGACGCGGTGATCCGCAGCGGCCCGCTGTCGGATTCGAGCCTGATGTCGCGGCGGCTCGGCCCGTTC
GCGTTCGTGCTGTGCGCGACGCCTGCGTATCTTGCGCAGGCCGGCACCCCGCGCACGCCGCGCGATCTCGAAGCGCACGA
GTGCGTGCGCTACTGCTTCCCGACCACCGGCAAGCTGCAGGACTGGGCGCTAGCAGCCGACGACGGCACGCCACTGAAGC
TACGCACCGCGCTGACCTGCAACAACATGGAAGCGCTGCGTGGCACCGTGCTCGCGGGGCTCGGCATCGGCTACATGCCC
GACTTCCTCGCGCGCGACGCGCTGGAGCACGGCGAGCTCGTTACCGTACTCGACGACTACCGGATCGCGCCGGGCCAATT
CTCGATCGTGTGGCCGTCGAGCCGGCAGTTGTCGCCAAAGCTGCGCGTGTTCGTCGACTTTCTGTGCGAGCGGCTGTTCA
GGTAG

Upstream 100 bases:

>100_bases
CCGATTCAATCCGCGAAAAACCACGCAAAGCTCCGCATATAACGGACTAAAATTCCGCAATTCACTCGACTACGTGCGTC
GGCGCACCCCCTTCGATTCG

Downstream 100 bases:

>100_bases
CCACCCCGCGGGCCGCCCGAACGGCGCGAATGCCGCGACGCGGCAGCGACGCCTCGCGCGCGCCCCTTTTCAGTCGGCCC
CGATCCGCTCCGCCTCCGCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MDNLTGIVAFVRTAEALSFVAAGRTLGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTEEGRHFYERCQRILEDFRDAE
ATVTASAQRPRGRLRVSLPVIGYRFLLPVLPEFRQRYPDVELDLDFNDRMVDVVEGGFDAVIRSGPLSDSSLMSRRLGPF
AFVLCATPAYLAQAGTPRTPRDLEAHECVRYCFPTTGKLQDWALAADDGTPLKLRTALTCNNMEALRGTVLAGLGIGYMP
DFLARDALEHGELVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERLFR

Sequences:

>Translated_294_residues
MDNLTGIVAFVRTAEALSFVAAGRTLGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTEEGRHFYERCQRILEDFRDAE
ATVTASAQRPRGRLRVSLPVIGYRFLLPVLPEFRQRYPDVELDLDFNDRMVDVVEGGFDAVIRSGPLSDSSLMSRRLGPF
AFVLCATPAYLAQAGTPRTPRDLEAHECVRYCFPTTGKLQDWALAADDGTPLKLRTALTCNNMEALRGTVLAGLGIGYMP
DFLARDALEHGELVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERLFR
>Mature_294_residues
MDNLTGIVAFVRTAEALSFVAAGRTLGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTEEGRHFYERCQRILEDFRDAE
ATVTASAQRPRGRLRVSLPVIGYRFLLPVLPEFRQRYPDVELDLDFNDRMVDVVEGGFDAVIRSGPLSDSSLMSRRLGPF
AFVLCATPAYLAQAGTPRTPRDLEAHECVRYCFPTTGKLQDWALAADDGTPLKLRTALTCNNMEALRGTVLAGLGIGYMP
DFLARDALEHGELVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERLFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=37.2822299651568, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=36.426116838488, Blast_Score=184, Evalue=6e-48,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=34.375, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=32.0819112627986, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=35.1535836177474, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=27.1477663230241, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=30.1038062283737, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1789173, Length=300, Percent_Identity=24.6666666666667, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787879, Length=289, Percent_Identity=28.3737024221453, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=29.553264604811, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786508, Length=266, Percent_Identity=24.4360902255639, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=24.6666666666667, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082132, Length=271, Percent_Identity=28.7822878228782, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=248, Percent_Identity=28.6290322580645, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=162, Percent_Identity=30.8641975308642, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=26.2975778546713, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788748, Length=178, Percent_Identity=33.1460674157303, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790262, Length=257, Percent_Identity=26.0700389105058, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790208, Length=148, Percent_Identity=32.4324324324324, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32764; Mature: 32764

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLTGIVAFVRTAEALSFVAAGRTLGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCEEEEECH
EGRHFYERCQRILEDFRDAEATVTASAQRPRGRLRVSLPVIGYRFLLPVLPEFRQRYPDV
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCE
ELDLDFNDRMVDVVEGGFDAVIRSGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTP
EEEECCCCCCHHHHHCCHHHHHHCCCCCHHHHHHHCCCHHEEHHHCCHHHHHHCCCCCCC
RDLEAHECVRYCFPTTGKLQDWALAADDGTPLKLRTALTCNNMEALRGTVLAGLGIGYMP
CCCCHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEEECCHHHHHHHHHHHCCCCCCH
DFLARDALEHGELVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERLFR
HHHHHHHHHCCCEEEEEECCEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDNLTGIVAFVRTAEALSFVAAGRTLGISASAVGKTIAKLEQSLGVRLFNRTTRRVTLTE
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCEEEEECH
EGRHFYERCQRILEDFRDAEATVTASAQRPRGRLRVSLPVIGYRFLLPVLPEFRQRYPDV
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCCCE
ELDLDFNDRMVDVVEGGFDAVIRSGPLSDSSLMSRRLGPFAFVLCATPAYLAQAGTPRTP
EEEECCCCCCHHHHHCCHHHHHHCCCCCHHHHHHHCCCHHEEHHHCCHHHHHHCCCCCCC
RDLEAHECVRYCFPTTGKLQDWALAADDGTPLKLRTALTCNNMEALRGTVLAGLGIGYMP
CCCCHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEEEECCHHHHHHHHHHHCCCCCCH
DFLARDALEHGELVTVLDDYRIAPGQFSIVWPSSRQLSPKLRVFVDFLCERLFR
HHHHHHHHHCCCEEEEEECCEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]