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The map label for this gene is rpoE [H]

Identifier: 78064674

GI number: 78064674

Start: 29961

End: 30482

Strand: Direct

Name: rpoE [H]

Synonym: Bcep18194_A3197

Alternate gene names: 78064674

Gene position: 29961-30482 (Clockwise)

Preceding gene: 78064671

Following gene: 78064675

Centisome position: 0.81

GC content: 67.24

Gene sequence:

>522_bases
ATGCCCTCCACCGCCCTCGACGACGAAGCACTGCGCGAACTCATCCCCAGGCTGAGACGCTTCGCGCTCTGGCTCGCGCG
CGACGTCCACGCGGCCGACGATCTCGTCCAGTCGACACTCGAGCGCGCGCTGTCGCGCTGGGCGAGCCGCCGCGACGACG
CGTCGTTGCGCAGCTGGCTCTTCACGATCCTTTATAGGCAGTTTCTCGACGGCAAGCGCAGCGCGAAGCGCTACGCGTGG
CTGCTTGGGCGCATCCGCGACGACGACGAAGCGCACTGGCCGTCCGCCGAACGCGAATTCGCGGCGCGCGCGACGCTCGA
AGCATTCGGCCGACTCTCGGACGAGCAGCGCAGCCTGTTGCTGCTCGTCGCGGTCGAAGGCTTCACCTATCAGGAAGTCG
CCGATCTGCTCGACATTCCGATCGGCACCGTGATGTCGAGGCTCTCCCGCGCGCGCCAGGCGCTGCGCCAGCTCAGCGAC
GGCGAGCTTCCCGCCCCTTCTCTGCGATTGATGAAGAAATGA

Upstream 100 bases:

>100_bases
TGGTTTATTCCACGAAAAGTTTTTTCCTATGCTGGTGGAATAAGCGGCGCCGACCGGCGTCCTACGTGGCATCTCGACCC
ATTCGGCAACCGGCCCGGCC

Downstream 100 bases:

>100_bases
ACACGCCTCCGAACGAACACGACCTTCAGGCCTACGTCGACGGCCAGCTCGACGACGATGCGCGCGCCGCGGTCGATCGC
TATCTCGCGCTGCATCCGGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MPSTALDDEALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWASRRDDASLRSWLFTILYRQFLDGKRSAKRYAW
LLGRIRDDDEAHWPSAEREFAARATLEAFGRLSDEQRSLLLLVAVEGFTYQEVADLLDIPIGTVMSRLSRARQALRQLSD
GELPAPSLRLMKK

Sequences:

>Translated_173_residues
MPSTALDDEALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWASRRDDASLRSWLFTILYRQFLDGKRSAKRYAW
LLGRIRDDDEAHWPSAEREFAARATLEAFGRLSDEQRSLLLLVAVEGFTYQEVADLLDIPIGTVMSRLSRARQALRQLSD
GELPAPSLRLMKK
>Mature_172_residues
PSTALDDEALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWASRRDDASLRSWLFTILYRQFLDGKRSAKRYAWL
LGRIRDDDEAHWPSAEREFAARATLEAFGRLSDEQRSLLLLVAVEGFTYQEVADLLDIPIGTVMSRLSRARQALRQLSDG
ELPAPSLRLMKK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19923; Mature: 19792

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSTALDDEALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWASRRDDASLRSWL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FTILYRQFLDGKRSAKRYAWLLGRIRDDDEAHWPSAEREFAARATLEAFGRLSDEQRSLL
HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHEE
LLVAVEGFTYQEVADLLDIPIGTVMSRLSRARQALRQLSDGELPAPSLRLMKK
EEEHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC
>Mature Secondary Structure 
PSTALDDEALRELIPRLRRFALWLARDVHAADDLVQSTLERALSRWASRRDDASLRSWL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FTILYRQFLDGKRSAKRYAWLLGRIRDDDEAHWPSAEREFAARATLEAFGRLSDEQRSLL
HHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHEE
LLVAVEGFTYQEVADLLDIPIGTVMSRLSRARQALRQLSDGELPAPSLRLMKK
EEEHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]