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The map label for this gene is recD [H]

Identifier: 78049997

GI number: 78049997

Start: 5116103

End: 5118478

Strand: Reverse

Name: recD [H]

Synonym: XCV4441

Alternate gene names: 78049997

Gene position: 5118478-5116103 (Counterclockwise)

Preceding gene: 78049998

Following gene: 78049996

Centisome position: 98.84

GC content: 73.7

Gene sequence:

>2376_bases
ATGACCCATCCAAACCTGCTCGCCGCCCTCAACCAGAGCGGCGCCCTGCGCACCTTGGATCTGGCCTTCGCGCAAAGCCT
GCAACGCCTGGAGCCGGACACCGACCCACAGATGCTGGCCGGCGCCGCGCTCGCCTCGCTGGCGGTCACCAGCGGCCACG
CCGGCCTGGACCCCGCCCGCGCCGCCATGTTGCTGGACGCGCGCGACGGCCCGCCGCCCACCTTCCCGGACCCCGCCGAC
TGGCAACGCAGCCTGGCCGCCTCGCGCTGGGTCGACCAACCGCAGCCCGACGCCCCGGCCGCCGCCGATTGCCCGCTCGT
CCTCGAACGCGGCCTGCTCTACCTGCGCCGCTACCGCGAGTACGAACGCCGCCTGGCCCTGGGCCTGCAACGCATCGCCG
CGCAACCGCTGCCGCCGGTCGACGCCGCCACGCTGGCGCCGCTGTTCGCGCAGTTGTTCCCGAACGCGATCCCAACCCCT
CGCACCGCGGAGCCAACCCCTCTCCCCCCGGGAGAGGGTGCCCGACGGGCGGGTGAGGGTACGGGCCTGCCCGCGCCAAT
CCACTACCAAGAGGGAACAACCCCCCCCACGCCATCCCACCCCCCGGACCGCCAGGCCCAGGCCGCCGCACTCGCGCTAC
GCCGCGCGTTACTGCTGGTCACCGGCGGCCCGGGCACCGGCAAGACCACCACCATCGCCCGCCTGCTGTTGCTGCGCATC
GCCCAGGCACGGGCATCCAGCACGCCGGCCCCACGCATCGCCCTGGCCGCGCCCACCGGCCGCGCCGCCGAGCGCATGGC
CGAAAGCCTGCGCGCCGCCATCGCGCGTGCCATCGCCGACGGCATCCAGCTCCCGGCCGCCGGCTCGCTTCCCGCACCAT
CGGGAAGCGCCGGCCTCATCACGTCCACGCATCCGACCAACGCCGCCGCGCCCGCGTCCACCGGCGCCGGATTGGAACTG
CAGACGCATGCCGCCTCAGAGCAGGGCGGGCCGCCCAGCTGGGAAGCGCTGCTGCCCAGCGGCGCCAGTACCCTGCATCG
TCTGCTCGGCGTCATCCCGGATTCCCCGCACTTCCACCACAACGCCGACAACCCGCTGCCGTTCGACCTGATCGTCGTCG
ACGAAGCCTCCATGGTCGACCTGCCGCTGATGTGCAAACTGGTCGACGCCGTCGCCGATGGCACCCAGCTGATCCTGCTT
GGCGATGCCGACCAGCTGCCTTCGGTGGAAGCCGGCGACGTGCTGGCCGCCATCCTGCAGGCCGCCGGCCCGGGCGATGC
CCTGCAGCCCGAAGACGCCCAGGCACTGCAATCGCTGCTCGGCAGCGCGCCCGTCGAGCGTCCGCCTGCGGTCACCTCCG
CCACCCGCAGCGGCGGCCTGGACGGCCACCGCGTGCACCTGCTGCGCGGCTATCGCCAGGCGCAGGATTTCGCACTGGCG
CCACTGGCCGACGCCATCCGCGCCGGCGATGCCGACACCGCCCTGGCCCTGCTGCGCAGCGGCGAACTGCCCGGCGTGCA
CTTCCACGAAGACGGCGAAGATCCGCTGGCACTCGGCCGCGACGCGCTGCTCGCGCACTGGCGCGCGCTGGCCAACGCCC
AGGACCCCGCCGCCGCCCTGCGCGATGCCGGCCGCCTGCGCCTGCTCACCGCGGTGCGTGCCGGCCCGCAAGGCGCACGC
GGCCTCAACGCCCGCATCGAACAACTGCTCGCCGACACCGGCTCCGGCGCCCGCCGTCTGGGCGGCGCCTCGCCCTGGTT
CCAGGGCCGCCTGCTGCTGATCACCGAAAACAGCTATCGCCACGGCCTGTTCAATGGCGATGTCGGTATCTGCCTGCGCA
GCGACGCGGGCCCTTCCCCCGGGCAGGGCGACGCAAGTGCCGTGACCGCGCGCGGCCACGCGGCACCGTCGTCAAGGCCG
GGCCACGCTGGCGACAGCGCACGCCATGACGCCCCCGCCACCGACCGCCGTGCCCAAGGCCCCTTGGTCGCCTGGTTCGA
AGGCGACGGCGACGGCCAGGTGCGCGGCTTCCACCCCGCCGCACTGCCCGCGCACGAAAGCGCCTTCGCCATGACCGTGC
ACAAGGCCCAGGGCAGCGAATTCGACGAGGTCTGGCTGCAACTGCCCACCCGCGACGCCCGCGTACTCAGCCGCGAACTG
CTCTACACCGGCATCACCCGCGCCCGCCGCGCCCTGCACCTGGCCGCCAGCGAAGCGGTCATGCGCGCCGCACTGGCACG
CCACGCCGCGCGGATCTCGGGCTTGGCGTGGCGGTTGGGTGCAAAAGACGACAAGCCACCGCCGGTTCCAGCACCCACGC
CAGCGCCGCTTCCACAACCGCCGCCCAGTGCGCCTGTGCAAGGTGCGCTGTTCTGA

Upstream 100 bases:

>100_bases
GCTGCGCGCCCGCAAAGCAAGCCAGCGCCGCGCATGCCAGCACAGGTGCGCGGAGCATGACGGGGCGCGAGCGCGCGTGC
GCCAAGGGAATGCCGACGCC

Downstream 100 bases:

>100_bases
TCAATCCAGTCGGTGCCGGCGCTGTCCCGCAATGGCCGACTGCACATTGGTCACATGATCAGGAGCTTTACTGACAAGGA
AGCCGAAAAGATCTGGGCTG

Product: exodeoxyribonuclease V alpha chain

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 791; Mature: 790

Protein sequence:

>791_residues
MTHPNLLAALNQSGALRTLDLAFAQSLQRLEPDTDPQMLAGAALASLAVTSGHAGLDPARAAMLLDARDGPPPTFPDPAD
WQRSLAASRWVDQPQPDAPAAADCPLVLERGLLYLRRYREYERRLALGLQRIAAQPLPPVDAATLAPLFAQLFPNAIPTP
RTAEPTPLPPGEGARRAGEGTGLPAPIHYQEGTTPPTPSHPPDRQAQAAALALRRALLLVTGGPGTGKTTTIARLLLLRI
AQARASSTPAPRIALAAPTGRAAERMAESLRAAIARAIADGIQLPAAGSLPAPSGSAGLITSTHPTNAAAPASTGAGLEL
QTHAASEQGGPPSWEALLPSGASTLHRLLGVIPDSPHFHHNADNPLPFDLIVVDEASMVDLPLMCKLVDAVADGTQLILL
GDADQLPSVEAGDVLAAILQAAGPGDALQPEDAQALQSLLGSAPVERPPAVTSATRSGGLDGHRVHLLRGYRQAQDFALA
PLADAIRAGDADTALALLRSGELPGVHFHEDGEDPLALGRDALLAHWRALANAQDPAAALRDAGRLRLLTAVRAGPQGAR
GLNARIEQLLADTGSGARRLGGASPWFQGRLLLITENSYRHGLFNGDVGICLRSDAGPSPGQGDASAVTARGHAAPSSRP
GHAGDSARHDAPATDRRAQGPLVAWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSREL
LYTGITRARRALHLAASEAVMRAALARHAARISGLAWRLGAKDDKPPPVPAPTPAPLPQPPPSAPVQGALF

Sequences:

>Translated_791_residues
MTHPNLLAALNQSGALRTLDLAFAQSLQRLEPDTDPQMLAGAALASLAVTSGHAGLDPARAAMLLDARDGPPPTFPDPAD
WQRSLAASRWVDQPQPDAPAAADCPLVLERGLLYLRRYREYERRLALGLQRIAAQPLPPVDAATLAPLFAQLFPNAIPTP
RTAEPTPLPPGEGARRAGEGTGLPAPIHYQEGTTPPTPSHPPDRQAQAAALALRRALLLVTGGPGTGKTTTIARLLLLRI
AQARASSTPAPRIALAAPTGRAAERMAESLRAAIARAIADGIQLPAAGSLPAPSGSAGLITSTHPTNAAAPASTGAGLEL
QTHAASEQGGPPSWEALLPSGASTLHRLLGVIPDSPHFHHNADNPLPFDLIVVDEASMVDLPLMCKLVDAVADGTQLILL
GDADQLPSVEAGDVLAAILQAAGPGDALQPEDAQALQSLLGSAPVERPPAVTSATRSGGLDGHRVHLLRGYRQAQDFALA
PLADAIRAGDADTALALLRSGELPGVHFHEDGEDPLALGRDALLAHWRALANAQDPAAALRDAGRLRLLTAVRAGPQGAR
GLNARIEQLLADTGSGARRLGGASPWFQGRLLLITENSYRHGLFNGDVGICLRSDAGPSPGQGDASAVTARGHAAPSSRP
GHAGDSARHDAPATDRRAQGPLVAWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSREL
LYTGITRARRALHLAASEAVMRAALARHAARISGLAWRLGAKDDKPPPVPAPTPAPLPQPPPSAPVQGALF
>Mature_790_residues
THPNLLAALNQSGALRTLDLAFAQSLQRLEPDTDPQMLAGAALASLAVTSGHAGLDPARAAMLLDARDGPPPTFPDPADW
QRSLAASRWVDQPQPDAPAAADCPLVLERGLLYLRRYREYERRLALGLQRIAAQPLPPVDAATLAPLFAQLFPNAIPTPR
TAEPTPLPPGEGARRAGEGTGLPAPIHYQEGTTPPTPSHPPDRQAQAAALALRRALLLVTGGPGTGKTTTIARLLLLRIA
QARASSTPAPRIALAAPTGRAAERMAESLRAAIARAIADGIQLPAAGSLPAPSGSAGLITSTHPTNAAAPASTGAGLELQ
THAASEQGGPPSWEALLPSGASTLHRLLGVIPDSPHFHHNADNPLPFDLIVVDEASMVDLPLMCKLVDAVADGTQLILLG
DADQLPSVEAGDVLAAILQAAGPGDALQPEDAQALQSLLGSAPVERPPAVTSATRSGGLDGHRVHLLRGYRQAQDFALAP
LADAIRAGDADTALALLRSGELPGVHFHEDGEDPLALGRDALLAHWRALANAQDPAAALRDAGRLRLLTAVRAGPQGARG
LNARIEQLLADTGSGARRLGGASPWFQGRLLLITENSYRHGLFNGDVGICLRSDAGPSPGQGDASAVTARGHAAPSSRPG
HAGDSARHDAPATDRRAQGPLVAWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSRELL
YTGITRARRALHLAASEAVMRAALARHAARISGLAWRLGAKDDKPPPVPAPTPAPLPQPPPSAPVQGALF

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=766, Percent_Identity=32.7676240208877, Blast_Score=242, Evalue=6e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 82184; Mature: 82053

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHPNLLAALNQSGALRTLDLAFAQSLQRLEPDTDPQMLAGAALASLAVTSGHAGLDPAR
CCCCHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
AAMLLDARDGPPPTFPDPADWQRSLAASRWVDQPQPDAPAAADCPLVLERGLLYLRRYRE
HEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
YERRLALGLQRIAAQPLPPVDAATLAPLFAQLFPNAIPTPRTAEPTPLPPGEGARRAGEG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGLPAPIHYQEGTTPPTPSHPPDRQAQAAALALRRALLLVTGGPGTGKTTTIARLLLLRI
CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHH
AQARASSTPAPRIALAAPTGRAAERMAESLRAAIARAIADGIQLPAAGSLPAPSGSAGLI
HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
TSTHPTNAAAPASTGAGLELQTHAASEQGGPPSWEALLPSGASTLHRLLGVIPDSPHFHH
ECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCC
NADNPLPFDLIVVDEASMVDLPLMCKLVDAVADGTQLILLGDADQLPSVEAGDVLAAILQ
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
AAGPGDALQPEDAQALQSLLGSAPVERPPAVTSATRSGGLDGHRVHLLRGYRQAQDFALA
HCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEHHHHHHHHHHHHHHH
PLADAIRAGDADTALALLRSGELPGVHFHEDGEDPLALGRDALLAHWRALANAQDPAAAL
HHHHHHHCCCHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
RDAGRLRLLTAVRAGPQGARGLNARIEQLLADTGSGARRLGGASPWFQGRLLLITENSYR
HCCCCEEEHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECCCCC
HGLFNGDVGICLRSDAGPSPGQGDASAVTARGHAAPSSRPGHAGDSARHDAPATDRRAQG
CCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PLVAWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSREL
CEEEEEECCCCCCEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHH
LYTGITRARRALHLAASEAVMRAALARHAARISGLAWRLGAKDDKPPPVPAPTPAPLPQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCC
PPSAPVQGALF
CCCCCCCCCCC
>Mature Secondary Structure 
THPNLLAALNQSGALRTLDLAFAQSLQRLEPDTDPQMLAGAALASLAVTSGHAGLDPAR
CCCHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHH
AAMLLDARDGPPPTFPDPADWQRSLAASRWVDQPQPDAPAAADCPLVLERGLLYLRRYRE
HEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
YERRLALGLQRIAAQPLPPVDAATLAPLFAQLFPNAIPTPRTAEPTPLPPGEGARRAGEG
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TGLPAPIHYQEGTTPPTPSHPPDRQAQAAALALRRALLLVTGGPGTGKTTTIARLLLLRI
CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHH
AQARASSTPAPRIALAAPTGRAAERMAESLRAAIARAIADGIQLPAAGSLPAPSGSAGLI
HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
TSTHPTNAAAPASTGAGLELQTHAASEQGGPPSWEALLPSGASTLHRLLGVIPDSPHFHH
ECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCC
NADNPLPFDLIVVDEASMVDLPLMCKLVDAVADGTQLILLGDADQLPSVEAGDVLAAILQ
CCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH
AAGPGDALQPEDAQALQSLLGSAPVERPPAVTSATRSGGLDGHRVHLLRGYRQAQDFALA
HCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCEEHHHHHHHHHHHHHHH
PLADAIRAGDADTALALLRSGELPGVHFHEDGEDPLALGRDALLAHWRALANAQDPAAAL
HHHHHHHCCCHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
RDAGRLRLLTAVRAGPQGARGLNARIEQLLADTGSGARRLGGASPWFQGRLLLITENSYR
HCCCCEEEHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEEECCCCC
HGLFNGDVGICLRSDAGPSPGQGDASAVTARGHAAPSSRPGHAGDSARHDAPATDRRAQG
CCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PLVAWFEGDGDGQVRGFHPAALPAHESAFAMTVHKAQGSEFDEVWLQLPTRDARVLSREL
CEEEEEECCCCCCEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHH
LYTGITRARRALHLAASEAVMRAALARHAARISGLAWRLGAKDDKPPPVPAPTPAPLPQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCC
PPSAPVQGALF
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]