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The map label for this gene is vapI [H]

Identifier: 78049995

GI number: 78049995

Start: 5115458

End: 5115748

Strand: Reverse

Name: vapI [H]

Synonym: XCV4439

Alternate gene names: 78049995

Gene position: 5115748-5115458 (Counterclockwise)

Preceding gene: 78049996

Following gene: 78049994

Centisome position: 98.79

GC content: 65.64

Gene sequence:

>291_bases
ATGACGGTCCTACCCAATATCCACCCTGGCGAAATTCTGCTTGAGGAGTTACTCGAGCCTCTGGGCATCAGCCAGAACGC
ACTGGCACGCGCCACCGGCGTCCCGCCGCGCGGTATCAACGAAATCGTGCTAGGCAAGCGCGGCATCACTGCCGACACTG
CCATGCGTCTGGCCGCCGCGTTGGGAACCTCCGAGCGCTTCTGGCTTGGCCTGCAGGCCGACGACGAACTGGAGCAGGCG
CATCGCGCGCTGGGCGACTTGCCGGCGCGGATCAAGCGGCTGGCGGCATGA

Upstream 100 bases:

>100_bases
TCCGGATCAACGATCAATGGCGCATCTGCTTCCGATGGATGGAAGGCGATGTGGTCCAGGTCGAAATCGTCGATTACCAC
TGAGCACGAGGCATCTGTCG

Downstream 100 bases:

>100_bases
TCCGGGCGGCTTCCAGCACATGCTGCTAAGTCGGCGCAGCGTGTGCGCTGCTCGCGAACACCGGCGTCGGGTTGGGCTGA
TGCGGCGGCGTGCCGGCCGG

Product: putative DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 96; Mature: 95

Protein sequence:

>96_residues
MTVLPNIHPGEILLEELLEPLGISQNALARATGVPPRGINEIVLGKRGITADTAMRLAAALGTSERFWLGLQADDELEQA
HRALGDLPARIKRLAA

Sequences:

>Translated_96_residues
MTVLPNIHPGEILLEELLEPLGISQNALARATGVPPRGINEIVLGKRGITADTAMRLAAALGTSERFWLGLQADDELEQA
HRALGDLPARIKRLAA
>Mature_95_residues
TVLPNIHPGEILLEELLEPLGISQNALARATGVPPRGINEIVLGKRGITADTAMRLAAALGTSERFWLGLQADDELEQAH
RALGDLPARIKRLAA

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 10285; Mature: 10154

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLPNIHPGEILLEELLEPLGISQNALARATGVPPRGINEIVLGKRGITADTAMRLAAA
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHH
LGTSERFWLGLQADDELEQAHRALGDLPARIKRLAA
HCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHCC
>Mature Secondary Structure 
TVLPNIHPGEILLEELLEPLGISQNALARATGVPPRGINEIVLGKRGITADTAMRLAAA
CCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHCCCCCCCHHHHHHHHHH
LGTSERFWLGLQADDELEQAHRALGDLPARIKRLAA
HCCCCCEEEECCCCHHHHHHHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8169216 [H]