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The map label for this gene is yjdC [H]

Identifier: 78049988

GI number: 78049988

Start: 5107274

End: 5107843

Strand: Reverse

Name: yjdC [H]

Synonym: XCV4432

Alternate gene names: 78049988

Gene position: 5107843-5107274 (Counterclockwise)

Preceding gene: 78049989

Following gene: 78049987

Centisome position: 98.64

GC content: 62.11

Gene sequence:

>570_bases
GTGGACAAGCCAACCAACGACACCCAACAGAAGATCCTGGCAACGGCTGAGGCGCTGATCTATCAGCACGGCATCCATGC
CACCGGCATGGACCTGCTGGTGAAGACCTCAGGCGTGGCGCGGAAAAGCATCTACCGCCACTTCGACAACAAGGACGAGG
TGGCCGCCGCGGCACTGAGCGCGCGCGACGTCCGTTGGCTCGAATGGTTCAGGCGCGAATGCGACAAGGCCGACAGCCCC
GAGGCGCGCATCCTGCGCATGTTCACGGTGCTCAAGGAATGGTTCCAGTCTGCCGGTTACCGCGGCTGTGCCTTCATCAA
CACCGCAGGCGAGGTCGGGGACCCCGACGATCCAATTCGCAAGATCGCCAAGCATCACAAACAGAAGTTGCTCGACTACA
CGCTGGAACTGACCGGGCAACTGGGTATTACGCAGCCGGCCGCACTGGCGCGCCAGCTGCTGCTTCTCATGGAAGGCGCA
ATCACCGTCTCGCGCGTGATGGGTGACGAAGACGCCGCAGACACCGCAAGGGATATCGCGCAGTTGTTGCTAAAGCAGGC
CACCGGCTAG

Upstream 100 bases:

>100_bases
ACGCCCGGATTGCCCGACCGTTCGTGTCGGGTGGTGAGGGCTCGGAACCCACGCACGCGCGAGCGTTGACAAGGGAGAAC
GATCGTTCTACCTTGGCGCC

Downstream 100 bases:

>100_bases
CGGCCTGACGCTCCGTCGCAATTTCAAAACACCGATGTATCCACTTTGATTGGAGACCTTGCCATGTCCAACGCTCACGC
TCGCCCGCCGCTTCCCCCCT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MDKPTNDTQQKILATAEALIYQHGIHATGMDLLVKTSGVARKSIYRHFDNKDEVAAAALSARDVRWLEWFRRECDKADSP
EARILRMFTVLKEWFQSAGYRGCAFINTAGEVGDPDDPIRKIAKHHKQKLLDYTLELTGQLGITQPAALARQLLLLMEGA
ITVSRVMGDEDAADTARDIAQLLLKQATG

Sequences:

>Translated_189_residues
MDKPTNDTQQKILATAEALIYQHGIHATGMDLLVKTSGVARKSIYRHFDNKDEVAAAALSARDVRWLEWFRRECDKADSP
EARILRMFTVLKEWFQSAGYRGCAFINTAGEVGDPDDPIRKIAKHHKQKLLDYTLELTGQLGITQPAALARQLLLLMEGA
ITVSRVMGDEDAADTARDIAQLLLKQATG
>Mature_189_residues
MDKPTNDTQQKILATAEALIYQHGIHATGMDLLVKTSGVARKSIYRHFDNKDEVAAAALSARDVRWLEWFRRECDKADSP
EARILRMFTVLKEWFQSAGYRGCAFINTAGEVGDPDDPIRKIAKHHKQKLLDYTLELTGQLGITQPAALARQLLLLMEGA
ITVSRVMGDEDAADTARDIAQLLLKQATG

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082374, Length=180, Percent_Identity=26.1111111111111, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21036; Mature: 21036

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKPTNDTQQKILATAEALIYQHGIHATGMDLLVKTSGVARKSIYRHFDNKDEVAAAALS
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
ARDVRWLEWFRRECDKADSPEARILRMFTVLKEWFQSAGYRGCAFINTAGEVGDPDDPIR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHH
KIAKHHKQKLLDYTLELTGQLGITQPAALARQLLLLMEGAITVSRVMGDEDAADTARDIA
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QLLLKQATG
HHHHHHCCC
>Mature Secondary Structure
MDKPTNDTQQKILATAEALIYQHGIHATGMDLLVKTSGVARKSIYRHFDNKDEVAAAALS
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
ARDVRWLEWFRRECDKADSPEARILRMFTVLKEWFQSAGYRGCAFINTAGEVGDPDDPIR
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHH
KIAKHHKQKLLDYTLELTGQLGITQPAALARQLLLLMEGAITVSRVMGDEDAADTARDIA
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QLLLKQATG
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]