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The map label for this gene is xynA [H]

Identifier: 78049911

GI number: 78049911

Start: 5006882

End: 5008114

Strand: Reverse

Name: xynA [H]

Synonym: XCV4355

Alternate gene names: 78049911

Gene position: 5008114-5006882 (Counterclockwise)

Preceding gene: 78049912

Following gene: 78049910

Centisome position: 96.71

GC content: 61.96

Gene sequence:

>1233_bases
ATGCGATCCAGTGCAATCGAAACCTGTGACCTCTCAACGGACCTGCTCATGCACATCAACCGCGCCAACCTCACCAAACG
CCTGGGATTGCTGATCGCCGGCCTCAGTGCAGTGTGCACGCTGCAGGCCCTGGCCGCGTGCGGGACGCCCGGCACCTCGC
TCAAGCAGGCGTATGCGCAAGGGTTTCTGCTGGGGACTGCCGTCAATGCCGATATCGTCTCCGGCAAGGACGCAGCCTCC
GCTGCGTTGGCGGCCTGTCACTTCAATGCGGTGACCGCGGAAAACGTGATGAAGGCCGAAGTGGTGGCGCCGCGTCGTGG
GGTGCAGGATTTCAGTGCAGCCGATGCATTCGTGGCCTACGCACAGCGCAATCGGCAGTTCGTGGTCGGTCACACCCTGG
TCTGGCACAACCAGACACCGGAGTGGTTCTTCACTACCGCCGATGGTCGGCCCAATACGCCGGCACAGCAGCTGGAACGC
ATGCGTGCGCATATCGCGGCGGTGGCCGGGCGTTACACGGGCAAGGTGCAAGCCTGGGATGTGGTCAACGAAATCATCGA
CGAAGACGGCAGTTACCGTTCGACCAACTGGGTACAGCGCGTGGGCGACGGCGACACGGTGGTCCGCAATGCCTTCACCT
TCGCACAGCGCTATGCACCGGATGCGCAGCTCTACTACAACGATTTCAATGCATGGCGGCCGGCCAAGCGTGATGGCATC
GTGCGCATGGTCAAGATGCTGCAGCAGGCTGGTGTCCGTATCGATGGCGTGGGCATGCAAGGCCATTGGGGGCTGAACTA
CCCCAGCTTGCGCGACATCGAGGACGCGATCGATGCGTACGCTGCGCTTGGCGTCAAGGTCATGATCACCGAGCTGGACA
TCGATGTGTTGCCGCTCACCAAGGAAGGCCAGATCATCGGCACCGGCATGGCGCACAAGCAGTTTCAGCTGCCGGAATTC
AAGCGCTTTCTCGACCCCTATCGCGATGGTTTGCCTGCCGACGTGCAGGCGCAATTGCGCGACCGGTATGCCGAGCTGTT
CGCGCTGTTCTGGCGCAAGCGCGACAAGATTGCGCGCGTCAGCGTGTGGGGCGTCAGCGATGACATGTCGTGGAAAAACG
ATTACCCGGTACCTGGGCGCACCAACTATCCGCTGCTGTTCGATCGCAATCATCAACCCAAGCCGGCGTTGGATGCGGTG
TTGGCCGTGCCCACCGCAACCGCTGCACGCTAG

Upstream 100 bases:

>100_bases
TGGCGATCGTGCGTGCCAAGGCCGGGGCGCGTGGCACGATCACCGTGCATGTGGAATCGGACACGTTGCAAGCCGCACAG
ACCCAGGTGGCGGTGCAGTG

Downstream 100 bases:

>100_bases
CGGCTGCCGGCCCAAGAGCTGCTGACCACCACGCCCGGGCACAGGCGAGCACGGCCGATGTTCGGTGCGGCATGGATGGC
TCGAAACACCGCATTCCTGC

Product: endo-1,4-beta-xylanase A

Products: NA

Alternate protein names: Xylanase A; 1,4-beta-D-xylan xylanohydrolase A [H]

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MRSSAIETCDLSTDLLMHINRANLTKRLGLLIAGLSAVCTLQALAACGTPGTSLKQAYAQGFLLGTAVNADIVSGKDAAS
AALAACHFNAVTAENVMKAEVVAPRRGVQDFSAADAFVAYAQRNRQFVVGHTLVWHNQTPEWFFTTADGRPNTPAQQLER
MRAHIAAVAGRYTGKVQAWDVVNEIIDEDGSYRSTNWVQRVGDGDTVVRNAFTFAQRYAPDAQLYYNDFNAWRPAKRDGI
VRMVKMLQQAGVRIDGVGMQGHWGLNYPSLRDIEDAIDAYAALGVKVMITELDIDVLPLTKEGQIIGTGMAHKQFQLPEF
KRFLDPYRDGLPADVQAQLRDRYAELFALFWRKRDKIARVSVWGVSDDMSWKNDYPVPGRTNYPLLFDRNHQPKPALDAV
LAVPTATAAR

Sequences:

>Translated_410_residues
MRSSAIETCDLSTDLLMHINRANLTKRLGLLIAGLSAVCTLQALAACGTPGTSLKQAYAQGFLLGTAVNADIVSGKDAAS
AALAACHFNAVTAENVMKAEVVAPRRGVQDFSAADAFVAYAQRNRQFVVGHTLVWHNQTPEWFFTTADGRPNTPAQQLER
MRAHIAAVAGRYTGKVQAWDVVNEIIDEDGSYRSTNWVQRVGDGDTVVRNAFTFAQRYAPDAQLYYNDFNAWRPAKRDGI
VRMVKMLQQAGVRIDGVGMQGHWGLNYPSLRDIEDAIDAYAALGVKVMITELDIDVLPLTKEGQIIGTGMAHKQFQLPEF
KRFLDPYRDGLPADVQAQLRDRYAELFALFWRKRDKIARVSVWGVSDDMSWKNDYPVPGRTNYPLLFDRNHQPKPALDAV
LAVPTATAAR
>Mature_410_residues
MRSSAIETCDLSTDLLMHINRANLTKRLGLLIAGLSAVCTLQALAACGTPGTSLKQAYAQGFLLGTAVNADIVSGKDAAS
AALAACHFNAVTAENVMKAEVVAPRRGVQDFSAADAFVAYAQRNRQFVVGHTLVWHNQTPEWFFTTADGRPNTPAQQLER
MRAHIAAVAGRYTGKVQAWDVVNEIIDEDGSYRSTNWVQRVGDGDTVVRNAFTFAQRYAPDAQLYYNDFNAWRPAKRDGI
VRMVKMLQQAGVRIDGVGMQGHWGLNYPSLRDIEDAIDAYAALGVKVMITELDIDVLPLTKEGQIIGTGMAHKQFQLPEF
KRFLDPYRDGLPADVQAQLRDRYAELFALFWRKRDKIARVSVWGVSDDMSWKNDYPVPGRTNYPLLFDRNHQPKPALDAV
LAVPTATAAR

Specific function: Unknown

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 45375; Mature: 45375

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSSAIETCDLSTDLLMHINRANLTKRLGLLIAGLSAVCTLQALAACGTPGTSLKQAYAQ
CCCCCCCCCCCCHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
GFLLGTAVNADIVSGKDAASAALAACHFNAVTAENVMKAEVVAPRRGVQDFSAADAFVAY
CEEEEEECCCCEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
AQRNRQFVVGHTLVWHNQTPEWFFTTADGRPNTPAQQLERMRAHIAAVAGRYTGKVQAWD
HHCCCEEEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
VVNEIIDEDGSYRSTNWVQRVGDGDTVVRNAFTFAQRYAPDAQLYYNDFNAWRPAKRDGI
HHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHH
VRMVKMLQQAGVRIDGVGMQGHWGLNYPSLRDIEDAIDAYAALGVKVMITELDIDVLPLT
HHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCEEEECC
KEGQIIGTGMAHKQFQLPEFKRFLDPYRDGLPADVQAQLRDRYAELFALFWRKRDKIARV
CCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
SVWGVSDDMSWKNDYPVPGRTNYPLLFDRNHQPKPALDAVLAVPTATAAR
EEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MRSSAIETCDLSTDLLMHINRANLTKRLGLLIAGLSAVCTLQALAACGTPGTSLKQAYAQ
CCCCCCCCCCCCHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC
GFLLGTAVNADIVSGKDAASAALAACHFNAVTAENVMKAEVVAPRRGVQDFSAADAFVAY
CEEEEEECCCCEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
AQRNRQFVVGHTLVWHNQTPEWFFTTADGRPNTPAQQLERMRAHIAAVAGRYTGKVQAWD
HHCCCEEEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
VVNEIIDEDGSYRSTNWVQRVGDGDTVVRNAFTFAQRYAPDAQLYYNDFNAWRPAKRDGI
HHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHH
VRMVKMLQQAGVRIDGVGMQGHWGLNYPSLRDIEDAIDAYAALGVKVMITELDIDVLPLT
HHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCEEEECC
KEGQIIGTGMAHKQFQLPEFKRFLDPYRDGLPADVQAQLRDRYAELFALFWRKRDKIARV
CCCCEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
SVWGVSDDMSWKNDYPVPGRTNYPLLFDRNHQPKPALDAVLAVPTATAAR
EEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7766665 [H]