Click here to switch to the map view.

The map label for this gene is rdgC [H]

Identifier: 78049883

GI number: 78049883

Start: 4974926

End: 4975831

Strand: Reverse

Name: rdgC [H]

Synonym: XCV4327

Alternate gene names: 78049883

Gene position: 4975831-4974926 (Counterclockwise)

Preceding gene: 78049884

Following gene: 78049882

Centisome position: 96.09

GC content: 63.69

Gene sequence:

>906_bases
ATGTTCTTTCGCAACCTCACCCTGTTCCGCTTTCCCACCACCCTGGATTTCTCCGAGATCGACACCTTGCTGCCGCCGGT
GCAGCTCAAGCCGGTCGGCCCGCTGGAAATGAGCTCGCGCGGTTTCATTTCCCCGTTCGGCCGCGACGAGCAGGAAGTGC
TCTCGCACCGTCTGGAAGATTTTCTGTGGCTCACCGTCGGTGGCGAGGACAAGATCCTGCCCGGCGCGGTGGTCAACGAC
CTGCTCGAGCGCAAGGTGGCCGAGATCGAGGAAAAGGAAGGCCGCCGCCCCGGTGGCAAGGCACGCAAGCGCCTCAAGGA
CGATTTGATCCATGAGTTGCTGCCGCGCGCCTTCGTCAAGAGCTCGCGCACCGACGCCATCCTGGACCTGCAGCACGGCT
ACATCGCGGTCAACAGCTCCAGCCGCAAGAGCGGCGAGAACGTGATGAGCGAGATCCGTGGCGCGCTCGGCAGCTTCCCG
GCGCTGCCGCTCAATGCCGAAGTGGCCCCGCGCGCCATCCTCACCGGCTGGATCGCCGGCGAACCCTTGCCCGAAGGCCT
GAGCCTGGGCGAAGAGTGCGAGATGAAGGACCCCATCGAAGGCGGCGCGGTGGTCAAGTGCCAGCACCAGGAACTGCGCG
GCGACGAGATCGACAAACACCTGGAAGCCGGCAAGCAGGTCACCAAGCTGGCGCTGGTGCTGGACGACAATCTGTCGTTC
GTGCTCGGCGACGATCTGGTGATCCGCAAGCTCAAGTTCCTCGACGGCGCCCTGGATCAGCTCGAACACAGCGAAGACGA
TGGCGCACGTGCCGAACTCGACGCACGCTTTGCGTTGATGAGCGCGGAAATCCGCCGGCTGTTCCTGTTGCTAGAAACCG
CGTTGAAGTTGAGCAAGGCCGAGTAA

Upstream 100 bases:

>100_bases
GCTGTCCGCCAGCCACGCCCCCCACGACAGCGACTGACGCCGCCGCTCCGGCTGCCGGCAGTCTTCCACCCTCCACGTTT
TTCTTCATTCGGTCCAACGC

Downstream 100 bases:

>100_bases
CCGGAACGTCGGACGGTGGCGGCGTTGAGGCGCGATGCGTGGCGCGAATCAAACGCTTTCGGTGCGTCGAGGGCGCGGTG
CCCTCGCCACACGCGGGACA

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MFFRNLTLFRFPTTLDFSEIDTLLPPVQLKPVGPLEMSSRGFISPFGRDEQEVLSHRLEDFLWLTVGGEDKILPGAVVND
LLERKVAEIEEKEGRRPGGKARKRLKDDLIHELLPRAFVKSSRTDAILDLQHGYIAVNSSSRKSGENVMSEIRGALGSFP
ALPLNAEVAPRAILTGWIAGEPLPEGLSLGEECEMKDPIEGGAVVKCQHQELRGDEIDKHLEAGKQVTKLALVLDDNLSF
VLGDDLVIRKLKFLDGALDQLEHSEDDGARAELDARFALMSAEIRRLFLLLETALKLSKAE

Sequences:

>Translated_301_residues
MFFRNLTLFRFPTTLDFSEIDTLLPPVQLKPVGPLEMSSRGFISPFGRDEQEVLSHRLEDFLWLTVGGEDKILPGAVVND
LLERKVAEIEEKEGRRPGGKARKRLKDDLIHELLPRAFVKSSRTDAILDLQHGYIAVNSSSRKSGENVMSEIRGALGSFP
ALPLNAEVAPRAILTGWIAGEPLPEGLSLGEECEMKDPIEGGAVVKCQHQELRGDEIDKHLEAGKQVTKLALVLDDNLSF
VLGDDLVIRKLKFLDGALDQLEHSEDDGARAELDARFALMSAEIRRLFLLLETALKLSKAE
>Mature_301_residues
MFFRNLTLFRFPTTLDFSEIDTLLPPVQLKPVGPLEMSSRGFISPFGRDEQEVLSHRLEDFLWLTVGGEDKILPGAVVND
LLERKVAEIEEKEGRRPGGKARKRLKDDLIHELLPRAFVKSSRTDAILDLQHGYIAVNSSSRKSGENVMSEIRGALGSFP
ALPLNAEVAPRAILTGWIAGEPLPEGLSLGEECEMKDPIEGGAVVKCQHQELRGDEIDKHLEAGKQVTKLALVLDDNLSF
VLGDDLVIRKLKFLDGALDQLEHSEDDGARAELDARFALMSAEIRRLFLLLETALKLSKAE

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=290, Percent_Identity=33.7931034482759, Blast_Score=175, Evalue=3e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 33400; Mature: 33400

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFRNLTLFRFPTTLDFSEIDTLLPPVQLKPVGPLEMSSRGFISPFGRDEQEVLSHRLED
CCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
FLWLTVGGEDKILPGAVVNDLLERKVAEIEEKEGRRPGGKARKRLKDDLIHELLPRAFVK
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
SSRTDAILDLQHGYIAVNSSSRKSGENVMSEIRGALGSFPALPLNAEVAPRAILTGWIAG
CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
EPLPEGLSLGEECEMKDPIEGGAVVKCQHQELRGDEIDKHLEAGKQVTKLALVLDDNLSF
CCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHEEEEEECCCCE
VLGDDLVIRKLKFLDGALDQLEHSEDDGARAELDARFALMSAEIRRLFLLLETALKLSKA
EECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
E
C
>Mature Secondary Structure
MFFRNLTLFRFPTTLDFSEIDTLLPPVQLKPVGPLEMSSRGFISPFGRDEQEVLSHRLED
CCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
FLWLTVGGEDKILPGAVVNDLLERKVAEIEEKEGRRPGGKARKRLKDDLIHELLPRAFVK
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
SSRTDAILDLQHGYIAVNSSSRKSGENVMSEIRGALGSFPALPLNAEVAPRAILTGWIAG
CCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
EPLPEGLSLGEECEMKDPIEGGAVVKCQHQELRGDEIDKHLEAGKQVTKLALVLDDNLSF
CCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHCCCHHHHHHHHHHHHHHHEEEEEECCCCE
VLGDDLVIRKLKFLDGALDQLEHSEDDGARAELDARFALMSAEIRRLFLLLETALKLSKA
EECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA