| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is clpB [H]
Identifier: 78049792
GI number: 78049792
Start: 4863335
End: 4866097
Strand: Reverse
Name: clpB [H]
Synonym: XCV4236
Alternate gene names: 78049792
Gene position: 4866097-4863335 (Counterclockwise)
Preceding gene: 78049793
Following gene: 78049789
Centisome position: 93.97
GC content: 62.9
Gene sequence:
>2763_bases ATGGCCGAGATCTCCCGCAGTGCCCTGTTCGGCAAGCTCAATCCGCTGGCCTACCGCGGTATCGAGAGCGCCACCGTGTT CTGCAAGCTGCGCGGCAACCCGTATGTGGAGCTGGTGCATTGGCTGCATCAGTTGCTGCAGCTGCAGGACTCGGACCTGC ATCGCGTCATCAAACACTTTCAACTCAACCCCTCCACGCTGGCGCGTGATGTCACGTCGGCCCTGGACGCCTTGCCGCGC GGTTCCACTGCCGTCACCGACCTGTCGGCCAATGTCGAAGAAGCGGTGGAGCGCGGTTGGGTGTATGCCTCACTGAGTTT TGGTGAAGCGCAGGTGCGCACCGGCTATCTGGTGGTTGGCATTCTGAGCGTGCGCGGTTTGCGTAATGCATTACTGGCGA TCTCCAAGGAGTTCGACAAGCTCAAGCCCGCGGTACTCAGCGAAGACTTTGCGCGGATCGTGGCCGGCTCCCCGGAAGAT GGTTTGCTGCCCAGCGATGGTTTCTCACTCGGTCAGACCGCTGCACCTGGGGAGGCTAGCGGCGCCATCGCGCCGGCCGC ACTGGGAAAGCAGGAAGCACTGAAGAAATTCACCACCGACCTCACCGCACAAGCACGCGAGGGCAAGCTGGACCCGATCA TCGGCCGCGACGACGAGATCCGCCAGGTGGTCGATATCCTGATGCGCCGCCGCCAGAACAACCCGATCCTGGTTGGCGAG ACCGGTGTCGGCAAGACCGCGGTGGTGGAAGGCTTCGCGCAACGCATCGCGCGCGGCGATGTGCCACCCGCGTTGAAGGA CGTGCAGCTGCGCACGCTGGATGTGGGCCTGCTGCAGGCCGGCGCCAGCATGAAGGGCGAATTCGAGCAACGCCTGCGCG CAGTCATCGACGAAGTGCAGGCCAGCCCCAAGCCGATCATTTTGTTTGTCGACGAAACCCACACCCTGGTCGGCGCCGGT GGCGCGGCCGGTACCGGCGATGCGGCCAACCTGCTCAAGCCCGCACTGGCGCGTGGCACCTTGCGCACCGTGGGGGCGAC CACGTTTGCCGAGTACAAGAAGTACATCGAAAAAGACCCCGCGCTGACGCGGCGCTTCCAGGCCGTGCAGGTGGACGAGC CGGACGAAGCCAAGGCAGTGCGCATGATGCGCGGCGTCGCTTCGATGATGGAACAGCACCACCGTGTGCAGATCCTGGAC GAAGCGCTGGAAGCGGCGGTCAAGCTCAGTCACCGCTACATCCCGGCGCGGCAGCTGCCGGACAAATCGGTGAGCCTACT CGACACCGCCTGCGCGCGCGTGGCGGTGAGCCTGCACGCTACGCCTGCGGAAGTGGACGACAGTCGCCGCCGCATCGAAT CGCTGGAGACCGAACACGCCATCATCGAACGCGAGCGTGCGATTGGTATCGTGGTGGAGGAGCGTGCTGCCGCTTGCGCC AACCTGCTGCAAAGCGAGCATAGCCGCCTGCGCGAGCTGGACCAGCGCTGGGTTGGCGAGAAGGCATTGGTGGACGAGCT GTTGTCGTTGCGCGCACAACTGCGTAGCGGTAATTCATCGGTGGAAGGCACCGGCAGTGCGTTGGAAGCAGAGGCCGACA CCGACGCAGATGCCGCTGTGGCGCAGTCGGCGTCTGGCGACACTGCCGTGCTCGACGCACCGGTGCAAGTTGATCGCGAC ACGCTGTTAGCGCGCCTGCAGTTGGTGCAGGCCGAACTGGCAGCATTACAAGGCGAATCGCCGCTGATCCTGCCCACCGT CGATTACCAAGCGGTTGCCGCCGTGGTCGCCGACTGGACCGGCATCCCAGTCGGGCGCATGGCGCGCAACGAGATCGACA CCGTGCTGCGCCTGCCCGACCTGCTGGCCAAGCGCGTGATCGGCCAAGACCATGCCATGGAGATGATCGCCAAGCGTATC CAGACCAGCCGCGCCGGTCTGGACAACCCGGACAAACCGATCGGCGTGTTCCTGCTGGCCGGCACCTCCGGCGTGGGCAA GACCGAAACCGCACTCGCGCTGGCCGAAACCTTGTACGGCGGCGAACAAAATCTGATCACCATCAACATGAGCGAGTACC AGGAAGCGCATACCGTCTCCTCGCTCAAGGGTGCACCGCCGGGCTATGTGGGCTACGGCGAAGGCGGCGTGCTCACCGAA GCGGTGCGACGCAAGCCGTACTCGGTCGTGTTGCTGGACGAAGTGGAAAAAGCCCACTCGGACGTGCACGAACTGTTCTT CCAGGTCTTCGACAAGGGCTGGATGGAAGACGGCGAAGGCCGCCGCATCGACTTCCGCAACACCTTGATCATCCTGACCA GCAACGCCGGCACCGACCTGATCGCCAGCCTGTGCAAGGACCCGGAACTGATACCCGACCCGGAAGCCATGGCCAAGGCC ATCCGCGAGCCGTTGTTGAAGGTATTTCCGCCGGCATTGATCGGGCGGCTGGTGGCGATTCCGTATTACCCGCTGAGCAA CGACATGCTCGGCCAGATCGTGCGGTTGCAGTTGAATCGCATCAAGAAGCGCATCGAGGAGCGCTACAAGATTCCGTTCG AGTACGACGATTCAGTTGTTGAGCTGGTGGTGAGCCGGTGTACCGAGAGCGAATCGGGTGGGCGGATGATCGATGCGATT TTGACGAATTCGATGTTGCCGGAGATCAGTCGCAAATTTCTGCGTGGGGTAGTGAATCGGGAACGGACTGAACGCGTTGA TATTCGTGCTGAAGAGTCTGCATTGGTTTATTCGTTTCTCTGA
Upstream 100 bases:
>100_bases GCATTGCCGACGCCGACGAGGTGCTGCTGCGCCCATCGGGCTGACGCACACCGCTCTCCCTTTCGCTCACACGCAACGTA CCGACTTCGAAGGACGCACC
Downstream 100 bases:
>100_bases TTTCGAAAATTTTATGCTGGATTTAGTGGTTAATAGAAAATTAGTGGCGACGGGAAGGCCGGGCCATGAGTGGGGGGGTG TATGACTGACTACGACACCT
Product: ClpB protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 920; Mature: 919
Protein sequence:
>920_residues MAEISRSALFGKLNPLAYRGIESATVFCKLRGNPYVELVHWLHQLLQLQDSDLHRVIKHFQLNPSTLARDVTSALDALPR GSTAVTDLSANVEEAVERGWVYASLSFGEAQVRTGYLVVGILSVRGLRNALLAISKEFDKLKPAVLSEDFARIVAGSPED GLLPSDGFSLGQTAAPGEASGAIAPAALGKQEALKKFTTDLTAQAREGKLDPIIGRDDEIRQVVDILMRRRQNNPILVGE TGVGKTAVVEGFAQRIARGDVPPALKDVQLRTLDVGLLQAGASMKGEFEQRLRAVIDEVQASPKPIILFVDETHTLVGAG GAAGTGDAANLLKPALARGTLRTVGATTFAEYKKYIEKDPALTRRFQAVQVDEPDEAKAVRMMRGVASMMEQHHRVQILD EALEAAVKLSHRYIPARQLPDKSVSLLDTACARVAVSLHATPAEVDDSRRRIESLETEHAIIERERAIGIVVEERAAACA NLLQSEHSRLRELDQRWVGEKALVDELLSLRAQLRSGNSSVEGTGSALEAEADTDADAAVAQSASGDTAVLDAPVQVDRD TLLARLQLVQAELAALQGESPLILPTVDYQAVAAVVADWTGIPVGRMARNEIDTVLRLPDLLAKRVIGQDHAMEMIAKRI QTSRAGLDNPDKPIGVFLLAGTSGVGKTETALALAETLYGGEQNLITINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTE AVRRKPYSVVLLDEVEKAHSDVHELFFQVFDKGWMEDGEGRRIDFRNTLIILTSNAGTDLIASLCKDPELIPDPEAMAKA IREPLLKVFPPALIGRLVAIPYYPLSNDMLGQIVRLQLNRIKKRIEERYKIPFEYDDSVVELVVSRCTESESGGRMIDAI LTNSMLPEISRKFLRGVVNRERTERVDIRAEESALVYSFL
Sequences:
>Translated_920_residues MAEISRSALFGKLNPLAYRGIESATVFCKLRGNPYVELVHWLHQLLQLQDSDLHRVIKHFQLNPSTLARDVTSALDALPR GSTAVTDLSANVEEAVERGWVYASLSFGEAQVRTGYLVVGILSVRGLRNALLAISKEFDKLKPAVLSEDFARIVAGSPED GLLPSDGFSLGQTAAPGEASGAIAPAALGKQEALKKFTTDLTAQAREGKLDPIIGRDDEIRQVVDILMRRRQNNPILVGE TGVGKTAVVEGFAQRIARGDVPPALKDVQLRTLDVGLLQAGASMKGEFEQRLRAVIDEVQASPKPIILFVDETHTLVGAG GAAGTGDAANLLKPALARGTLRTVGATTFAEYKKYIEKDPALTRRFQAVQVDEPDEAKAVRMMRGVASMMEQHHRVQILD EALEAAVKLSHRYIPARQLPDKSVSLLDTACARVAVSLHATPAEVDDSRRRIESLETEHAIIERERAIGIVVEERAAACA NLLQSEHSRLRELDQRWVGEKALVDELLSLRAQLRSGNSSVEGTGSALEAEADTDADAAVAQSASGDTAVLDAPVQVDRD TLLARLQLVQAELAALQGESPLILPTVDYQAVAAVVADWTGIPVGRMARNEIDTVLRLPDLLAKRVIGQDHAMEMIAKRI QTSRAGLDNPDKPIGVFLLAGTSGVGKTETALALAETLYGGEQNLITINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTE AVRRKPYSVVLLDEVEKAHSDVHELFFQVFDKGWMEDGEGRRIDFRNTLIILTSNAGTDLIASLCKDPELIPDPEAMAKA IREPLLKVFPPALIGRLVAIPYYPLSNDMLGQIVRLQLNRIKKRIEERYKIPFEYDDSVVELVVSRCTESESGGRMIDAI LTNSMLPEISRKFLRGVVNRERTERVDIRAEESALVYSFL >Mature_919_residues AEISRSALFGKLNPLAYRGIESATVFCKLRGNPYVELVHWLHQLLQLQDSDLHRVIKHFQLNPSTLARDVTSALDALPRG STAVTDLSANVEEAVERGWVYASLSFGEAQVRTGYLVVGILSVRGLRNALLAISKEFDKLKPAVLSEDFARIVAGSPEDG LLPSDGFSLGQTAAPGEASGAIAPAALGKQEALKKFTTDLTAQAREGKLDPIIGRDDEIRQVVDILMRRRQNNPILVGET GVGKTAVVEGFAQRIARGDVPPALKDVQLRTLDVGLLQAGASMKGEFEQRLRAVIDEVQASPKPIILFVDETHTLVGAGG AAGTGDAANLLKPALARGTLRTVGATTFAEYKKYIEKDPALTRRFQAVQVDEPDEAKAVRMMRGVASMMEQHHRVQILDE ALEAAVKLSHRYIPARQLPDKSVSLLDTACARVAVSLHATPAEVDDSRRRIESLETEHAIIERERAIGIVVEERAAACAN LLQSEHSRLRELDQRWVGEKALVDELLSLRAQLRSGNSSVEGTGSALEAEADTDADAAVAQSASGDTAVLDAPVQVDRDT LLARLQLVQAELAALQGESPLILPTVDYQAVAAVVADWTGIPVGRMARNEIDTVLRLPDLLAKRVIGQDHAMEMIAKRIQ TSRAGLDNPDKPIGVFLLAGTSGVGKTETALALAETLYGGEQNLITINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTEA VRRKPYSVVLLDEVEKAHSDVHELFFQVFDKGWMEDGEGRRIDFRNTLIILTSNAGTDLIASLCKDPELIPDPEAMAKAI REPLLKVFPPALIGRLVAIPYYPLSNDMLGQIVRLQLNRIKKRIEERYKIPFEYDDSVVELVVSRCTESESGGRMIDAIL TNSMLPEISRKFLRGVVNRERTERVDIRAEESALVYSFL
Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the clpA/clpB family [H]
Homologues:
Organism=Homo sapiens, GI13540606, Length=269, Percent_Identity=34.5724907063197, Blast_Score=154, Evalue=5e-37, Organism=Escherichia coli, GI1788943, Length=719, Percent_Identity=42.2809457579972, Blast_Score=533, Evalue=1e-152, Organism=Escherichia coli, GI1787109, Length=263, Percent_Identity=44.106463878327, Blast_Score=237, Evalue=2e-63, Organism=Saccharomyces cerevisiae, GI6320464, Length=729, Percent_Identity=38.2716049382716, Blast_Score=470, Evalue=1e-133, Organism=Saccharomyces cerevisiae, GI6323002, Length=726, Percent_Identity=35.9504132231405, Blast_Score=436, Evalue=1e-123,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR017729 - InterPro: IPR018368 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR023150 [H]
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]
EC number: NA
Molecular weight: Translated: 100214; Mature: 100083
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEISRSALFGKLNPLAYRGIESATVFCKLRGNPYVELVHWLHQLLQLQDSDLHRVIKHF CCCCHHHHHHHCCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHH QLNPSTLARDVTSALDALPRGSTAVTDLSANVEEAVERGWVYASLSFGEAQVRTGYLVVG CCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHCCEEEEEECCCCHHHHCCCCEEH ILSVRGLRNALLAISKEFDKLKPAVLSEDFARIVAGSPEDGLLPSDGFSLGQTAAPGEAS HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC GAIAPAALGKQEALKKFTTDLTAQAREGKLDPIIGRDDEIRQVVDILMRRRQNNPILVGE CCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEC TGVGKTAVVEGFAQRIARGDVPPALKDVQLRTLDVGLLQAGASMKGEFEQRLRAVIDEVQ CCCCHHHHHHHHHHHHHCCCCCCCHHCCCHHEEHHHHHHCCCCCCHHHHHHHHHHHHHHH ASPKPIILFVDETHTLVGAGGAAGTGDAANLLKPALARGTLRTVGATTFAEYKKYIEKDP CCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCH ALTRRFQAVQVDEPDEAKAVRMMRGVASMMEQHHRVQILDEALEAAVKLSHRYIPARQLP HHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC DKSVSLLDTACARVAVSLHATPAEVDDSRRRIESLETEHAIIERERAIGIVVEERAAACA CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHH NLLQSEHSRLRELDQRWVGEKALVDELLSLRAQLRSGNSSVEGTGSALEAEADTDADAAV HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCHHHH AQSASGDTAVLDAPVQVDRDTLLARLQLVQAELAALQGESPLILPTVDYQAVAAVVADWT HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCC GIPVGRMARNEIDTVLRLPDLLAKRVIGQDHAMEMIAKRIQTSRAGLDNPDKPIGVFLLA CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE GTSGVGKTETALALAETLYGGEQNLITINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTE CCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH AVRRKPYSVVLLDEVEKAHSDVHELFFQVFDKGWMEDGEGRRIDFRNTLIILTSNAGTDL HHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCHHH IASLCKDPELIPDPEAMAKAIREPLLKVFPPALIGRLVAIPYYPLSNDMLGQIVRLQLNR HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH IKKRIEERYKIPFEYDDSVVELVVSRCTESESGGRMIDAILTNSMLPEISRKFLRGVVNR HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC ERTERVDIRAEESALVYSFL HHHHHCCCEECCCEEEEECC >Mature Secondary Structure AEISRSALFGKLNPLAYRGIESATVFCKLRGNPYVELVHWLHQLLQLQDSDLHRVIKHF CCCHHHHHHHCCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHH QLNPSTLARDVTSALDALPRGSTAVTDLSANVEEAVERGWVYASLSFGEAQVRTGYLVVG CCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHCCEEEEEECCCCHHHHCCCCEEH ILSVRGLRNALLAISKEFDKLKPAVLSEDFARIVAGSPEDGLLPSDGFSLGQTAAPGEAS HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC GAIAPAALGKQEALKKFTTDLTAQAREGKLDPIIGRDDEIRQVVDILMRRRQNNPILVGE CCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEC TGVGKTAVVEGFAQRIARGDVPPALKDVQLRTLDVGLLQAGASMKGEFEQRLRAVIDEVQ CCCCHHHHHHHHHHHHHCCCCCCCHHCCCHHEEHHHHHHCCCCCCHHHHHHHHHHHHHHH ASPKPIILFVDETHTLVGAGGAAGTGDAANLLKPALARGTLRTVGATTFAEYKKYIEKDP CCCCCEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCH ALTRRFQAVQVDEPDEAKAVRMMRGVASMMEQHHRVQILDEALEAAVKLSHRYIPARQLP HHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC DKSVSLLDTACARVAVSLHATPAEVDDSRRRIESLETEHAIIERERAIGIVVEERAAACA CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHH NLLQSEHSRLRELDQRWVGEKALVDELLSLRAQLRSGNSSVEGTGSALEAEADTDADAAV HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCHHHH AQSASGDTAVLDAPVQVDRDTLLARLQLVQAELAALQGESPLILPTVDYQAVAAVVADWT HHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCC GIPVGRMARNEIDTVLRLPDLLAKRVIGQDHAMEMIAKRIQTSRAGLDNPDKPIGVFLLA CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE GTSGVGKTETALALAETLYGGEQNLITINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTE CCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH AVRRKPYSVVLLDEVEKAHSDVHELFFQVFDKGWMEDGEGRRIDFRNTLIILTSNAGTDL HHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCHHH IASLCKDPELIPDPEAMAKAIREPLLKVFPPALIGRLVAIPYYPLSNDMLGQIVRLQLNR HHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH IKKRIEERYKIPFEYDDSVVELVVSRCTESESGGRMIDAILTNSMLPEISRKFLRGVVNR HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC ERTERVDIRAEESALVYSFL HHHHHCCCEECCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]