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The map label for this gene is rpoE7 [H]

Identifier: 78049638

GI number: 78049638

Start: 4677931

End: 4678467

Strand: Reverse

Name: rpoE7 [H]

Synonym: XCV4082

Alternate gene names: 78049638

Gene position: 4678467-4677931 (Counterclockwise)

Preceding gene: 78049641

Following gene: 78049637

Centisome position: 90.34

GC content: 67.78

Gene sequence:

>537_bases
ATGCCACCACCACGCCCGCCAATGGATGCTCTGGACGATGACCAACTGCGCGCCGTGCTGCCGGCGCTGCGCCGCTTTGC
GCGCTCGCTGAGCGGCGAGCCCGCCAGCGCCGACGATCTGGTGCAAGCCACACTGGAGCGCGCGCTGCGGCGGTGGCACA
CCCGGCATACCGCCGAAGCCCTGCAGCCCTGGCTGTTCGCCATCCTGTACCGGCAGTTTCTGGATGGGCAGCGGCGTGCC
GCGCGCTGGCAGCGGGTCGTGGGCCTGTTCGCGCCGCAGCAGCCCAGCCAATCCGCGTCCGCTGAGCAGGTGCACGACGG
CCGTGCCATGCTGGCCAGCCTTGCATCATTGCCGGCCGAACAACGCGCGTTGTTGCTCTTGGTCAGCGTGGACGGTTTCA
GTTATCGCGAAGTGGCCGATACCCTCGGCATCCCGATCGGCACCGTGATGTCGCGCCTGTCGCGTGCGCGCGAACGCCTG
CGTGCCGTGAACGAAGGCCAGGTGAATCACGCACCTGCATTGAGGATCCTGAAATGA

Upstream 100 bases:

>100_bases
AGTGAGACGACATGCGAGCCGCGTTATTCCCTCGTCCACCAACGACGGTGGCACGCACCGATCGCGGGAATAATCCACGC
TCCAGTGCGTCTACCGTGTG

Downstream 100 bases:

>100_bases
CCACCATACCGCCCGACGAACACGCGCTGCACGCCTACGTCGATGGCCGCCTGACGCCGGAGCAACATGCAGCAGTGGCA
GCCTGGCTGCAGGCACATCC

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MPPPRPPMDALDDDQLRAVLPALRRFARSLSGEPASADDLVQATLERALRRWHTRHTAEALQPWLFAILYRQFLDGQRRA
ARWQRVVGLFAPQQPSQSASAEQVHDGRAMLASLASLPAEQRALLLLVSVDGFSYREVADTLGIPIGTVMSRLSRARERL
RAVNEGQVNHAPALRILK

Sequences:

>Translated_178_residues
MPPPRPPMDALDDDQLRAVLPALRRFARSLSGEPASADDLVQATLERALRRWHTRHTAEALQPWLFAILYRQFLDGQRRA
ARWQRVVGLFAPQQPSQSASAEQVHDGRAMLASLASLPAEQRALLLLVSVDGFSYREVADTLGIPIGTVMSRLSRARERL
RAVNEGQVNHAPALRILK
>Mature_177_residues
PPPRPPMDALDDDQLRAVLPALRRFARSLSGEPASADDLVQATLERALRRWHTRHTAEALQPWLFAILYRQFLDGQRRAA
RWQRVVGLFAPQQPSQSASAEQVHDGRAMLASLASLPAEQRALLLLVSVDGFSYREVADTLGIPIGTVMSRLSRARERLR
AVNEGQVNHAPALRILK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19872; Mature: 19741

Theoretical pI: Translated: 11.53; Mature: 11.53

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPPRPPMDALDDDQLRAVLPALRRFARSLSGEPASADDLVQATLERALRRWHTRHTAEA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LQPWLFAILYRQFLDGQRRAARWQRVVGLFAPQQPSQSASAEQVHDGRAMLASLASLPAE
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHH
QRALLLLVSVDGFSYREVADTLGIPIGTVMSRLSRARERLRAVNEGQVNHAPALRILK
HHHEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
>Mature Secondary Structure 
PPPRPPMDALDDDQLRAVLPALRRFARSLSGEPASADDLVQATLERALRRWHTRHTAEA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LQPWLFAILYRQFLDGQRRAARWQRVVGLFAPQQPSQSASAEQVHDGRAMLASLASLPAE
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHH
QRALLLLVSVDGFSYREVADTLGIPIGTVMSRLSRARERLRAVNEGQVNHAPALRILK
HHHEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]